(Q34260427)

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Conserved stem-loop structures in the HIV-1 RNA region containing the A3 3' splice site and its cis-regulatory element: possible involvement in RNA splicing

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

Conserved stem-loop structures in the HIV-1 RNA region containing the A3 3' splice site and its cis-regulatory element: possible involvement in RNA splicing (English)

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

cis-regulatory element

1 reference

based on heuristic

inferred from title

author name string

S Jacquenet

1

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

D Ropers

2

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

P S Bilodeau

3

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

L Damier

4

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

A Mougin

5

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

C M Stoltzfus

6

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

C Branlant

7

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

language of work or name

0 references

publication date

1 January 2001

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

Nucleic Acids Research

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

29

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

2

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

464-478

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

Functional recognition of the 3' splice site AG by the splicing factor U2AF35.

1 reference

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6 July 2018

Evidence for substrate-specific requirement of the splicing factor U2AF(35) and for its function after polypyrimidine tract recognition by U2AF(65).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=29680

6 July 2018

Splicing regulatory elements within tat exon 2 of human immunodeficiency virus type 1 (HIV-1) are characteristic of group M but not group O HIV-1 strains.

1 reference

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6 July 2018

hnRNP A/B proteins are required for inhibition of HIV-1 pre-mRNA splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=29680

6 July 2018

Crystal structure of the two-RRM domain of hnRNP A1 (UP1) complexed with single-stranded telomeric DNA

1 reference

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6 July 2018

Structural basis for recognition of the tra mRNA precursor by the Sex-lethal protein

1 reference

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6 July 2018

Regulation of fibronectin EDA exon alternative splicing: possible role of RNA secondary structure for enhancer display.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=29680

6 July 2018

Origin of HIV-1 in the chimpanzee Pan troglodytes troglodytes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=29680

6 July 2018

hnRNP A1 recruited to an exon in vivo can function as an exon splicing silencer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=29680

6 July 2018

HIV-1: fifteen proteins and an RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=29680

6 July 2018

An intron element modulating 5' splice site selection in the hnRNP A1 pre-mRNA interacts with hnRNP A1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=29680

6 July 2018

A specific RNA hairpin loop structure binds the RNA recognition motifs of the Drosophila SR protein B52

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=29680

6 July 2018

Splicing efficiency of human immunodeficiency virus type 1 tat RNA is determined by both a suboptimal 3' splice site and a 10 nucleotide exon splicing silencer element located within tat exon 2.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=29680

6 July 2018

Secondary structure of the yeast Saccharomyces cerevisiae pre-U3A snoRNA and its implication for splicing efficiency

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=29680

6 July 2018

Intramolecular structure in yeast introns aids the early steps of in vitro spliceosome assembly.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=29680

6 July 2018

Alternative splicing of human immunodeficiency virus type 1 mRNA modulates viral protein expression, replication, and infectivity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=29680

6 July 2018

Presence of negative and positive cis-acting RNA splicing elements within and flanking the first tat coding exon of human immunodeficiency virus type 1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=29680

6 July 2018

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=29680

6 July 2018

Identification of positive and negative splicing regulatory elements within the terminal tat-rev exon of human immunodeficiency virus type 1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=29680

6 July 2018

Presence of exon splicing silencers within human immunodeficiency virus type 1 tat exon 2 and tat-rev exon 3: evidence for inhibition mediated by cellular factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=29680

6 July 2018

The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=29680

6 July 2018

The tat/rev intron of human immunodeficiency virus type 1 is inefficiently spliced because of suboptimal signals in the 3' splice site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=29680

6 July 2018

RNA binding specificity of hnRNP A1: significance of hnRNP A1 high-affinity binding sites in pre-mRNA splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=29680

6 July 2018

Two strong 5' splice sites and competing, suboptimal 3' splice sites involved in alternative splicing of human immunodeficiency virus type 1 RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=29680

6 July 2018

Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei

1 reference

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6 July 2018

The gapped duplex DNA approach to oligonucleotide-directed mutation construction.

1 reference

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6 July 2018

The 216-nucleotide intron of the E1A pre-mRNA contains a hairpin structure that permits utilization of unusually distant branch acceptors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=29680

6 July 2018

Complete nucleotide sequence of the AIDS virus, HTLV-III

1 reference

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6 July 2018

A secondary structure at the 3' splice site affects the in vitro splicing reaction of mouse immunoglobulin mu chain pre-mRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=29680

6 July 2018

Improved predictions of secondary structures for RNA

1 reference

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Genetic variability of the AIDS virus: nucleotide sequence analysis of two isolates from African patients

1 reference

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6 July 2018

Unexpected point mutations activate cryptic 3' splice sites by perturbing a natural secondary structure within a yeast intron

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=29680

6 July 2018

A second origin of DNA plus-strand synthesis is required for optimal human immunodeficiency virus replication

1 reference

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6 July 2018

Cloning and domain structure of the mammalian splicing factor U2AF

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=29680

6 July 2018

The D1-A2 and D2-A2 Pairs of Splice Sites from Human Immunodeficiency Virus Type 1 Are Highly Efficientin Vitro,in Spite of an Unusual Branch Site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=29680

28 October 2018

Functional sites in the 5' region of human immunodeficiency virus type 1 RNA form defined structural domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=29680

28 October 2018

16S-23S and 23S-5S intergenic spacer regions of Streptococcus thermophilus and Streptococcus salivarius, primary and secondary structure

1 reference

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Regulation of mRNA accumulation by a human immunodeficiency virus trans-activator protein

1 reference

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28 October 2018

Overlapping cis sites used for splicing of HIV-1 env/nef and rev mRNAs

1 reference

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12 December 2020

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Isolation and properties of ribonuclease isolated from cobra venom

1 reference

https://pubmed.ncbi.nlm.nih.gov/11139617

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The organization of 3' splice-site sequences in mammalian introns

1 reference

https://pubmed.ncbi.nlm.nih.gov/11139617

12 December 2020

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1 reference

https://pubmed.ncbi.nlm.nih.gov/11139617

12 December 2020

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Determination of an RNA structure involved in splicing inhibition of a muscle-specific exon

1 reference

https://pubmed.ncbi.nlm.nih.gov/11139617

12 December 2020

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Identifiers

10.1093/NAR/29.2.464

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

ResearchGate publication ID

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