(Q34046871)

30 July 2017

title

Engineering and characterization of fluorogenic glycine riboswitches (English)

1 reference

30 July 2017

Simon Ketterer

1 reference

30 July 2017

Lukas Gladis

series ordinal

1 reference

30 July 2017

Adnan Kozica

series ordinal

1 reference

30 July 2017

Matthias Meier

series ordinal

1 reference

30 July 2017

language of work or name

English

0 references

publication date

24 May 2016

1 reference

30 July 2017

published in

Nucleic Acids Research

1 reference

30 July 2017

1 reference

30 July 2017

1 reference

30 July 2017

page(s)

5983-5992

1 reference

Creative Commons Attribution-NonCommercial 4.0 International

30 July 2017

start time

11 November 2016

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

cites work

Rapid RNA-ligand interaction analysis through high-information content conformational and stability landscapes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

Automated physics-based design of synthetic riboswitches from diverse RNA aptamers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

Systematic reconstruction of binding and stability landscapes of the fluorogenic aptamer spinach

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

Cooperativity, allostery and synergism in ligand binding to riboswitches

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

RNA-Based Fluorescent Biosensors for Live Cell Imaging of Second Messenger Cyclic di-AMP.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

Imaging metabolite dynamics in living cells using a Spinach-based riboswitch

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

Unexpected versatility in bacterial riboswitches

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

A general design strategy for protein-responsive riboswitches in mammalian cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

Ligand binding by the tandem glycine riboswitch depends on aptamer dimerization but not double ligand occupancy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

DNA-rescuable allosteric inhibition of aptamer II ligand affinity by aptamer I element in the shortened Vibrio cholerae glycine riboswitch

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

Themes and variations in riboswitch structure and function.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

Plug-and-play fluorophores extend the spectral properties of Spinach

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

RNA-based fluorescent biosensors for live cell imaging of second messengers cyclic di-GMP and cyclic AMP-GMP

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

Systematic reconstruction of RNA functional motifs with high-throughput microfluidics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

A high-throughput, quantitative cell-based screen for efficient tailoring of RNA device activity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

Metabolite recognition principles and molecular mechanisms underlying riboswitch function

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

Fluorescence imaging of cellular metabolites with RNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

An energetically beneficial leader-linker interaction abolishes ligand-binding cooperativity in glycine riboswitches

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

Prospects for riboswitch discovery and analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

RNA Mimics of Green Fluorescent Protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

Structural Basis of Cooperative Ligand Binding by the Glycine Riboswitch

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

Structural Insights into Ligand Recognition by a Sensing Domain of the Cooperative Glycine Riboswitch

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

Identification of a tertiary interaction important for cooperative ligand binding by the glycine riboswitch

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

Ribozymes and Riboswitches: Modulation of RNA Function by Small Molecules

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

Dissecting electrostatic screening, specific ion binding, and ligand binding in an energetic model for glycine riboswitch folding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

Amino acid recognition and gene regulation by riboswitches.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

5 July 2018

The Vienna RNA websuite

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

Chemical basis of glycine riboswitch cooperativity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

Microfluidic large-scale integration: the evolution of design rules for biological automation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

A systems approach to measuring the binding energy landscapes of transcription factors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

Structural transitions and thermodynamics of a glycine-dependent riboswitch from Vibrio cholerae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

Thermodynamic and kinetic characterization of ligand binding to the purine riboswitch aptamer domain

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

A glycine-dependent riboswitch that uses cooperative binding to control gene expression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

Gene regulation by riboswitches

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

Genetic control by a metabolite binding mRNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

Manipulation of intracellular magnesium content in polymyxin B nonapeptide-sensitized Escherichia coli by ionophore A23187.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937332

The kinetics of ligand binding by an adenine-sensing riboswitch

5 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW465

Ligand-induced folding of the thiM TPP riboswitch investigated by a structure-based fluorescence spectroscopic approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW465

Nanomolar fluorescent detection of c-di-GMP using a modular aptamer strategy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW465

The Speed of RNA Transcription and Metabolite Binding Kinetics Operate an FMN Riboswitch

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW465

Synthetic riboswitches - A tool comes of age

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27220466

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Patch oligodeoxynucleotide synthesis (POS): a novel method for synthesis of long DNA sequences and full-length genes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27220466

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Influence of Environment on the Content and Composition of Microbial Free Amino Acid Pools

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27220466

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKW465

1 reference

30 July 2017

1 reference

30 July 2017

1 reference