(Q33976821)

30 July 2017

title

Reduced local mutation density in regulatory DNA of cancer genomes is linked to DNA repair (English)

1 reference

30 July 2017

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30 July 2017

Gad Getz

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John Stamatoyannopoulos

object named as

John A Stamatoyannopoulos

1 reference

30 July 2017

Levi A Garraway

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30 July 2017

Paz Polak

1 reference

30 July 2017

Michael S Lawrence

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30 July 2017

Nina Stoletzki

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30 July 2017

Petar Stojanov

1 reference

30 July 2017

Robert E Thurman

1 reference

30 July 2017

Sergei Mirkin

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30 July 2017

Shamil R Sunyaev

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30 July 2017

language of work or name

English

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publication date

15 December 2013

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30 July 2017

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30 July 2017

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30 July 2017

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30 July 2017

page(s)

71-75

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Mutational heterogeneity in cancer and the search for new cancer-associated genes

30 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

APOBEC3B is an enzymatic source of mutation in breast cancer.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Highly recurrent TERT promoter mutations in human melanoma

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

An expansive human regulatory lexicon encoded in transcription factor footprints

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

The accessible chromatin landscape of the human genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Mutational signatures of de-differentiation in functional non-coding regions of melanoma genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Chronic low-dose ultraviolet-induced mutagenesis in nucleotide excision repair-deficient cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Melanoma genome sequencing reveals frequent PREX2 mutations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Mutational processes molding the genomes of 21 breast cancers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Clustered mutations in yeast and in human cancers can arise from damaged long single-strand DNA regions.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

KEGG for integration and interpretation of large-scale molecular data sets

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Regulation of nucleotide excision repair by UV-DDB: prioritization of damage recognition to internucleosomal DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

A high-resolution map of human evolutionary constraint using 29 mammals

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Genomic sequencing of colorectal adenocarcinomas identifies a recurrent VTI1A-TCF7L2 fusion

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Evolution of the deaminase fold and multiple origins of eukaryotic editing and mutagenic nucleic acid deaminases from bacterial toxin systems

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Determinants and dynamics of genome accessibility

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Initial genome sequencing and analysis of multiple myeloma

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

DNA polymerases and cancer.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Open, repair and close again: chromatin dynamics and the response to UV-induced DNA damage

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Advances in understanding cancer genomes through second-generation sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Oxidative stress triggers the preferential assembly of base excision repair complexes on open chromatin regions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

A small-cell lung cancer genome with complex signatures of tobacco exposure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

A comprehensive catalogue of somatic mutations from a human cancer genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Sequencing newly replicated DNA reveals widespread plasticity in human replication timing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Human mutation rate associated with DNA replication timing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Transcription-coupled DNA repair: two decades of progress and surprises

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Xeroderma pigmentosum genes: functions inside and outside DNA repair

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Eukaryotic nucleotide excision repair: from understanding mechanisms to influencing biology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

The intricate structural chemistry of base excision repair machinery: implications for DNA damage recognition, removal, and repair.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Oxidative and nitrative DNA damage in animals and patients with inflammatory diseases in relation to inflammation-related carcinogenesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Initiation of DNA repair mediated by a stalled RNA polymerase IIO.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Repair of UV lesions in nucleosomes--intrinsic properties and remodeling

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Functional characterization of global genomic DNA repair and its implications for cancer.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Repair of oxidized DNA bases in the yeast Saccharomyces cerevisiae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Clusters of S1 Nuclease-Hypersensitive Sites Induced In Vivo by DNA Damage

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Mammalian DNA nucleotide excision repair reconstituted with purified protein components.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Nuclease hypersensitive sites in chromatin

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

8-Hydroxyguanine, an abundant form of oxidative DNA damage, causes G-T and A-C substitutions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

Evolution at two levels in humans and chimpanzees

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116484

The large-scale distribution of somatic mutations in cancer genomes.

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNBT.2778

Chromatin organization is a major influence on regional mutation rates in human cancer cells.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNBT.2778

BEDOPS: high-performance genomic feature operations

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNBT.2778

Nucleosomal structure of undamaged DNA regions suppresses the non-specific DNA binding of the XPC complex

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24336318

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Nucleosomes suppress spontaneous mutations base-specifically in eukaryotes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24336318

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NBT.2778

1 reference

Dimensions Publication ID

30 July 2017

0 references

1 reference

30 July 2017

1 reference