(Q33891568)

29 July 2017

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title

Structure, stability and function of RNA pseudoknots involved in stimulating ribosomal frameshifting (English)

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29 July 2017

Giedroc DP

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29 July 2017

Theimer CA

series ordinal

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29 July 2017

Nixon PL

series ordinal

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29 July 2017

language of work or name

English

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publication date

1 April 2000

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Journal of Molecular Biology

29 July 2017

published in

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29 July 2017

volume

298

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29 July 2017

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29 July 2017

page(s)

167-185

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Solution structure and thermodynamics of a divalent metal ion binding site in an RNA pseudoknot

29 July 2017

cites work

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12 December 2020

Structural studies of the RNA pseudoknot required for readthrough of the gag-termination codon of murine leukemia virus

1 reference

12 December 2020

Two efficient ribosomal frameshifting events are required for synthesis of mouse mammary tumor virus gag-related polyproteins

1 reference

12 December 2020

Placement of protein and RNA structures into a 5 A-resolution map of the 50S ribosomal subunit

1 reference

12 December 2020

The role of RNA pseudoknot stem 1 length in the promotion of efficient -1 ribosomal frameshifting

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12 December 2020

Thermodynamics of folding a pseudoknotted mRNA fragment

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12 December 2020

Tunable alignment of macromolecules by filamentous phage yields dipolar coupling interactions

1 reference

12 December 2020

Structure of the autoregulatory pseudoknot within the gene 32 messenger RNA of bacteriophages T2 and T6: a model for a possible family of structurally related RNA pseudoknots

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12 December 2020

Contribution of the intercalated adenosine at the helical junction to the stability of the gag-pro frameshifting pseudoknot from mouse mammary tumor virus

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12 December 2020

Structure of yeast phenylalanine tRNA at 3 Å resolution

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12 December 2020

Pseudoknots and the control of protein synthesis

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12 December 2020

Evidence for an RNA pseudoknot loop-helix interaction essential for efficient -1 ribosomal frameshifting

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12 December 2020

Translational accuracy and the fitness of bacteria

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12 December 2020

RNA pseudoknots. Stability and loop size requirements

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12 December 2020

Pseudoknots: a new motif in the RNA game

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12 December 2020

Thermodynamics of RNA folding in a conserved ribosomal RNA domain.

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12 December 2020

Thermodynamic stability of the P4-P6 domain RNA tertiary structure measured by temperature gradient gel electrophoresis

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12 December 2020

The tRNA-like structure at the 3' terminus of turnip yellow mosaic virus RNA. Differences and similarities with canonical tRNA

1 reference

12 December 2020

A new principle of RNA folding based on pseudoknotting

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12 December 2020

RNA pseudoknots that interact with components of the translation apparatus

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12 December 2020

Evidence that a downstream pseudoknot is required for translational read-through of the Moloney murine leukemia virus gag stop codon

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12 December 2020

Identification and analysis of the pseudoknot-containing gag-pro ribosomal frameshift signal of simian retrovirus-1.

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12 December 2020

Strategies for RNA folding

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12 December 2020

Specific mutations in a viral RNA pseudoknot drastically change ribosomal frameshifting efficiency

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12 December 2020

RNA structure: crystal clear?

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12 December 2020

Mutational analysis of the "slippery-sequence" component of a coronavirus ribosomal frameshifting signal

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12 December 2020

Thermodynamics of stabilization of RNA pseudoknots by cobalt(III) hexaammine

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12 December 2020

Pseudoknot-dependent read-through of retroviral gag termination codons: importance of sequences in the spacer and loop 2

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12 December 2020

Equilibrium unfolding (folding) pathway of a model H-type pseudoknotted RNA: the role of magnesium ions in stability

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12 December 2020

Autogenous regulatory site on the bacteriophage T4 gene 32 messenger RNA.

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12 December 2020

Aminoacylation identity switch of turnip yellow mosaic virus RNA from valine to methionine results in an infectious virus

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12 December 2020

Minor groove RNA triplex in the crystal structure of a ribosomal frameshifting viral pseudoknot

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12 December 2020

Functional and structural analysis of a pseudoknot upstream of the tag-encoded sequence in E. coli tmRNA.

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12 December 2020

Sequence dependence of stability for coaxial stacking of RNA helixes with Watson-Crick base paired interfaces

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12 December 2020

Mutational analysis of the RNA pseudoknot involved in efficient ribosomal frameshifting in simian retrovirus-1

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12 December 2020

Kinetic and secondary structure analysis of Naegleria andersoni GIR1, a group I ribozyme whose putative biological function is site-specific hydrolysis.

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12 December 2020

Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding

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12 December 2020

Further perspective on the catalytic core and secondary structure of ribonuclease P RNA

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12 December 2020

Equilibrium unfolding pathway of an H-type RNA pseudoknot which promotes programmed -1 ribosomal frameshifting

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12 December 2020

Peptidyl-transferase inhibitors have antiviral properties by altering programmed -1 ribosomal frameshifting efficiencies: development of model systems

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12 December 2020

Characterization of ribosomal frameshifting in HIV-1 gag-pol expression

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12 December 2020

A characteristic bent conformation of RNA pseudoknots promotes -1 frameshifting during translation of retroviral RNA.

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12 December 2020

Characterization of an efficient coronavirus ribosomal frameshifting signal: requirement for an RNA pseudoknot

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12 December 2020

A three-way junction and constituent stem-loops as the stimulator for programmed -1 frameshifting in bacterial insertion sequence IS911.

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12 December 2020

Mutational analysis of the RNA pseudoknot component of a coronavirus ribosomal frameshifting signal

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12 December 2020

Programmed translational frameshifting

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12 December 2020

Translational suppression in gene expression in retroviruses and retrotransposons.

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12 December 2020

NMR structure of a classical pseudoknot: interplay of single- and double-stranded RNA

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12 December 2020

Energetics of a strongly pH dependent RNA tertiary structure in a frameshifting pseudoknot

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12 December 2020

Base-pairings within the RNA pseudoknot associated with the simian retrovirus-1 gag-pro frameshift site

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12 December 2020

Recoding: dynamic reprogramming of translation.

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12 December 2020

Ribosome gymnastics--degree of difficulty 9.5, style 10.0.

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12 December 2020

A mutant RNA pseudoknot that promotes ribosomal frameshifting in mouse mammary tumor virus

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12 December 2020

Stitching together RNA tertiary architectures

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12 December 2020

Crystal structure of a hepatitis delta virus ribozyme

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12 December 2020

Human immunodeficiency virus type 1 gag-pol frameshifting is dependent on downstream mRNA secondary structure: demonstration by expression in vivo

1 reference

12 December 2020

A model of the translational apparatus based on a three-dimensional reconstruction of the Escherichia coli ribosome

1 reference

12 December 2020

A -1 ribosomal frameshift in a double-stranded RNA virus of yeast forms a gag-pol fusion protein

1 reference

12 December 2020

Ribosomal frameshifting on viral RNAs

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12 December 2020

The loop E-loop D region of Escherichia coli 5S rRNA: the solution structure reveals an unusual loop that may be important for binding ribosomal proteins

1 reference

12 December 2020

Translational maintenance of frame: mutants of Saccharomyces cerevisiae with altered -1 ribosomal frameshifting efficiencies

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12 December 2020

Differential response to frameshift signals in eukaryotic and prokaryotic translational systems

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12 December 2020

RNA structure prediction

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12 December 2020

Non-nearest neighbor effects on the thermodynamics of unfolding of a model mRNA pseudoknot

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12 December 2020

Intermediates and kinetic traps in the folding of a large ribozyme revealed by circular dichroism and UV absorbance spectroscopies and catalytic activity

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12 December 2020

Structural and functional studies of retroviral RNA pseudoknots involved in ribosomal frameshifting: nucleotides at the junction of the two stems are important for efficient ribosomal frameshifting.

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12 December 2020

Functional requirements for specific ligand recognition by a biotin-binding RNA pseudoknot

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12 December 2020

Analysis of the role of the pseudoknot component in the SRV-1 gag-pro ribosomal frameshift signal: loop lengths and stability of the stem regions

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12 December 2020

Programmed ribosomal frameshifting: much ado about knotting!

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12 December 2020

The telomerase RNA pseudoknot is critical for the stable assembly of a catalytically active ribonucleoprotein

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12 December 2020

Transfer RNA-like Structures in Viral Genomes

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12 December 2020

Ribosomal frameshifting in yeast viruses.

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12 December 2020

Translating old drugs into new treatments: ribosomal frameshifting as a target for antiviral agents

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12 December 2020

A pseudoknotted RNA oligonucleotide

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12 December 2020

An approximation of loop free energy values of RNA H-pseudoknots

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12 December 2020

Structure of a bacterial 30S ribosomal subunit at 5.5 A resolution

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12 December 2020

An RNA pseudoknot and an optimal heptameric shift site are required for highly efficient ribosomal frameshifting on a retroviral messenger RNA

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12 December 2020

Calculating the electrostatic properties of RNA provides new insights into molecular interactions and function

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12 December 2020

Three-dimensional models of the tRNA-like 3' termini of some plant viral RNAs

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12 December 2020

Ribosomal movement impeded at a pseudoknot required for frameshifting

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12 December 2020

Identification and analysis of the gag-pol ribosomal frameshift site of feline immunodeficiency virus

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12 December 2020

The structure of an RNA pseudoknot that causes efficient frameshifting in mouse mammary tumor virus

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12 December 2020

A dual-luciferase reporter system for studying recoding signals

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12 December 2020

Signals for ribosomal frameshifting in the Rous sarcoma virus gag-pol region

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12 December 2020

RNA pseudoknots: structure, detection, and prediction

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12 December 2020

A model of protein synthesis based on cryo-electron microscopy of the E. coli ribosome

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12 December 2020

Stabilization of RNA structure by Mg ions. Specific and non-specific effects.

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12 December 2020

Base dynamics in a UUCG tetraloop RNA hairpin characterized by 15N spin relaxation: correlations with structure and stability

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12 December 2020

The Mof2/Sui1 protein is a general monitor of translational accuracy

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12 December 2020

An examination of coaxial stacking of helical stems in a pseudoknot motif: the gene 32 messenger RNA pseudoknot of bacteriophage T2

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12 December 2020

Structural and functional aspects of RNA pseudoknots

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12 December 2020

Conformation of a non-frameshifting RNA pseudoknot from mouse mammary tumor virus

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12 December 2020

Exploration of metal ion binding sites in RNA folds by Brownian-dynamics simulations

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12 December 2020

Importance of ribosomal frameshifting for human immunodeficiency virus type 1 particle assembly and replication

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12 December 2020

Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the A site of the E. coli ribosome

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12 December 2020

Folding of an mRNA pseudoknot required for stop codon readthrough: effects of mono- and divalent ions on stability

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12 December 2020

Unusual mRNA pseudoknot structure is recognized by a protein translational repressor

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12 December 2020

RNA tectonics: towards RNA design

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12 December 2020

In vivo HIV-1 frameshifting efficiency is directly related to the stability of the stem-loop stimulatory signal.

1 reference

12 December 2020

Ribosomal frameshifting requires a pseudoknot in the Saccharomyces cerevisiae double-stranded RNA virus

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12 December 2020

A functional pseudoknot in 16S ribosomal RNA

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12 December 2020

The where, what and how of ribosomal frameshifting in retroviral protein synthesis

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12 December 2020

A pseudoknot is required for efficient translational initiation and regulation of the Escherichia coli rpsO gene coding for ribosomal protein S15.

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12 December 2020

Translational misreading: mutations in translation elongation factor 1alpha differentially affect programmed ribosomal frameshifting and drug sensitivity

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12 December 2020

Bipartite signal for read-through suppression in murine leukemia virus mRNA: an eight-nucleotide purine-rich sequence immediately downstream of the gag termination codon followed by an RNA pseudoknot

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12 December 2020

Structural probing and mutagenic analysis of the stem-loop required for Escherichia coli dnaX ribosomal frameshifting: programmed efficiency of 50%

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12 December 2020

Conformational distributions of a four-way DNA junction revealed by time-resolved fluorescence resonance energy transfer.

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12 December 2020

Ribosomal pausing during translation of an RNA pseudoknot

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12 December 2020

An NMR and mutational study of the pseudoknot within the gene 32 mRNA of bacteriophage T2: insights into a family of structurally related RNA pseudoknots

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12 December 2020

X-ray crystal structures of 70S ribosome functional complexes

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12 December 2020

Identifiers

DOI

10.1006/JMBI.2000.3668

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29 July 2017

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