(Q33508980)

27 July 2017

title

Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data (English)

1 reference

27 July 2017

1 reference

John C Marioni

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Yoav Gilad

1 reference

27 July 2017

Jonathan K. Pritchard

object named as

Jonathan K Pritchard

1 reference

27 July 2017

Jacob F Degner

1 reference

27 July 2017

Athma A Pai

1 reference

27 July 2017

Joseph K Pickrell

1 reference

27 July 2017

Everlyne Nkadori

1 reference

27 July 2017

language of work or name

English

0 references

publication date

6 October 2009

1 reference

27 July 2017

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27 July 2017

1 reference

27 July 2017

1 reference

27 July 2017

page(s)

3207-3212

1 reference

Fast and accurate short read alignment with Burrows-Wheeler transform

27 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788925

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788925

Transcriptome-wide identification of novel imprinted genes in neonatal mouse brain

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788925

Global survey of genomic imprinting by transcriptome sequencing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788925

Allele-specific gene expression patterns in primary leukemic cells reveal regulation of gene expression by CpG site methylation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788925

High-resolution mapping of expression-QTLs yields insight into human gene regulation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788925

Mapping short DNA sequencing reads and calling variants using mapping quality scores

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788925

Differential allelic expression in the human genome: a robust approach to identify genetic and epigenetic cis-acting mechanisms regulating gene expression

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788925

Independent effects of cis- and trans-regulatory variation on gene expression in Drosophila melanogaster

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788925

A second generation human haplotype map of over 3.1 million SNPs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788925

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788925

A haplotype map of the human genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788925

Simultaneous genotyping, gene-expression measurement, and detection of allele-specific expression with oligonucleotide arrays

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788925

Minireview: GNAS: normal and abnormal functions.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788925

Allele-specific gene expression uncovered

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788925

Mechanisms of imprinting of the Prader-Willi/Angelman region.

14 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP579

Allelic Variation in Human Gene Expression

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP579

DNA sequencing. A plan to capture human diversity in 1000 genomes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19808877

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTP579

1 reference

journals/bioinformatics/DegnerMPPNGP09

27 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

release_zbejuhmfmbfq7l47xl3rtmsnja

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/zbejuhmfmbfq7l47xl3rtmsnja

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

2788925

1 reference

27 July 2017

1 reference