(Q33571303)

28 July 2017

title

Using deep sequencing to characterize the biophysical mechanism of a transcriptional regulatory sequence (English)

1 reference

28 July 2017

Justin B Kinney

0 references

Curtis G Callan

1 reference

28 July 2017

Anand Murugan

1 reference

28 July 2017

Edward C Cox

series ordinal

1 reference

28 July 2017

language of work or name

English

0 references

publication date

3 May 2010

1 reference

Proceedings of the National Academy of Sciences of the United States of America

28 July 2017

1 reference

inferred from page(s)

published in

1 reference

28 July 2017

volume

107

1 reference

28 July 2017

1 reference

28 July 2017

page(s)

9158-9163

1 reference

Deciphering a transcriptional regulatory code: modeling short-range repression in the Drosophila embryo.

28 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889059

High-resolution analysis of DNA regulatory elements by synthetic saturation mutagenesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889059

Analysis of combinatorial cis-regulation in synthetic and genomic promoters

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889059

Genome-wide mapping of in vivo protein-DNA interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889059

Combinatorial transcriptional control of the lactose operon of Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889059

A systems approach to measuring the binding energy landscapes of transcription factors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889059

Precise physical models of protein-DNA interaction from high-throughput data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889059

Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889059

A comprehensive library of fluorescent transcriptional reporters for Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889059

Genome sequencing in microfabricated high-density picolitre reactors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889059

Transcriptional regulation by the numbers: models.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889059

Non-independence of Mnt repressor-operator interaction determined by a new quantitative multiple fluorescence relative affinity (QuMFRA) assay.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889059

Genome-wide location and function of DNA binding proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889059

Transcription activation by catabolite activator protein (CAP)

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889059

A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889059

Mechanism of CRP-mediated cya suppression in Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889059

Analysis of E. coli promoter sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889059

Selection of DNA binding sites by regulatory proteins. II. The binding specificity of cyclic AMP receptor protein to recognition sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889059

Excess information at bacteriophage T7 genomic promoters detected by a random cloning technique.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889059

Analysis of the sequence-specific interactions between Cro repressor and operator DNA by systematic base substitution experiments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889059

Lambda repressor recognizes the approximately 2-fold symmetric half-operator sequences asymmetrically

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889059

Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889059

The lactose operon-controlling elements: a complex paradigm

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889059

Fluorescence-Activated Cell Sorting

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889059

A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1004290107

DNA looping and physical constraints on transcription regulation.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1004290107

Predicting expression patterns from regulatory sequence in Drosophila segmentation

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1004290107

DNA sequence determinants for binding of the Escherichia coli catabolite gene activator protein

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20439748

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1004290107

1 reference

release_l2hlw7czjfgnvbhqh3slgcxtoe

28 July 2017

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/l2hlw7czjfgnvbhqh3slgcxtoe

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

2889059

1 reference

28 July 2017

1 reference