(Q30834202)

21 August 2017

Dynamical transition and proteinquake in photoactive yellow protein (English)

1 reference

21 August 2017

Kazuhito Itoh

1 reference

21 August 2017

Masaki Sasai

series ordinal

1 reference

21 August 2017

language of work or name

English

0 references

publication date

4 October 2004

1 reference

Proceedings of the National Academy of Sciences of the United States of America

21 August 2017

1 reference

inferred from page(s)

published in

1 reference

21 August 2017

101

1 reference

21 August 2017

1 reference

21 August 2017

14736-14741

1 reference

Conformational changes associated with protein-protein interactions

21 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Theory of protein folding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Protein kinetics: structures of intermediates and reaction mechanism from time-resolved x-ray data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Protein topology determines binding mechanism

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

The 'glass transition' in protein dynamics: what it is, why it occurs, and how to exploit it.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Photoactive Yellow Protein: A Prototypic PAS Domain Sensory Protein and Development of a Common Signaling Mechanism

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

PAS domains. Common structure and common flexibility

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Phytochrome ancestry: sensors of bilins and light.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Conformational change of the actomyosin complex drives the multiple stepping movement

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Transient exposure of hydrophobic surface in the photoactive yellow protein monitored with Nile Red.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Folding and signaling share the same pathway in a photoreceptor

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Structure of the I1 early intermediate of photoactive yellow protein by FTIR spectroscopy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Protein flexibility from the dynamical transition: a force constant analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Probing the nature of the blue-shifted intermediate of photoactive yellow protein in solution by NMR: hydrogen-deuterium exchange data and pH studies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Speeding molecular recognition by using the folding funnel: the fly-casting mechanism

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

How soft is a protein? A protein dynamics force constant measured by neutron scattering.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Collective protein dynamics in relation to function

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Fragilities of liquids predicted from the random first order transition theory of glasses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

A simple model for calculating the kinetics of protein folding from three-dimensional structures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Folding and binding cascades: shifts in energy landscapes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Investigating protein dynamics in collective coordinate space

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Structural and dynamic changes of photoactive yellow protein during its photocycle in solution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Photoactive yellow protein: a structural prototype for the three-dimensional fold of the PAS domain superfamily.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Dynamics and function of proteins: the search for general concepts

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Theory of protein folding: the energy landscape perspective

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Structure of a protein photocycle intermediate by millisecond time-resolved crystallography

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Active site mutants implicate key residues for control of color and light cycle kinetics of photoactive yellow protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Protein folding thermodynamics applied to the photocycle of the photoactive yellow protein.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Protein states and proteinquakes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Isolation and characterization of soluble cytochromes, ferredoxins and other chromophoric proteins from the halophilic phototrophic bacterium Ectothiorhodospira halophila

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

The Energy Landscapes and Motions of Proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

Studies on protein folding, unfolding and fluctuations by computer simulation. I. The effect of specific amino acid sequence represented by specific inter-unit interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522019

The physics and bioinformatics of binding and folding-an energy landscape perspective

21 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0402978101

Formation of a new buried charge drives a large-amplitude protein quake in photoreceptor activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0402978101

PAS domain receptor photoactive yellow protein is converted to a molten globule state upon activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0402978101

Conformations of proteins in equilibrium.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0402978101

Photoisomerization and proton transfer in photoactive yellow protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0402978101

Mimic of photocycle by a protein folding reaction in photoactive yellow protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0402978101

Lack of negative charge in the E46Q mutant of photoactive yellow protein prevents partial unfolding of the blue-shifted intermediate

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0402978101

Structural basis of a phototropin light switch

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0402978101

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0402978101

The role of the N-terminal domain of photoactive yellow protein in the transient partial unfolding during signalling state formation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15466708

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Exact solution of the Muñoz-Eaton model for protein folding

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15466708

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Light-induced global conformational change of photoactive yellow protein in solution

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15466708

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0402978101

1 reference

21 August 2017

0 references

1 reference

21 August 2017

PubMed publication ID

15466708

1 reference