(Q30628119)

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Integration of genome data and protein structures: prediction of protein folds, protein interactions and "molecular phenotypes" of single nucleotide polymorphisms

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scholarly article

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Europe PubMed Central

PubMed publication ID

25 June 2017

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Europe PubMed Central

Integration of genome data and protein structures: prediction of protein folds, protein interactions and "molecular phenotypes" of single nucleotide polymorphisms (English)

1 reference

Europe PubMed Central

PubMed publication ID

25 June 2017

protein folding

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protein structure prediction

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single-nucleotide polymorphism

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based on heuristic

inferred from title

3

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Europe PubMed Central

PubMed publication ID

25 June 2017

author name string

Sunyaev S

1

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Europe PubMed Central

PubMed publication ID

25 June 2017

Lathe W 3rd

2

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Europe PubMed Central

PubMed publication ID

25 June 2017

publication date

1 February 2001

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Europe PubMed Central

PubMed publication ID

25 June 2017

Current Opinion in Structural Biology

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Europe PubMed Central

PubMed publication ID

25 June 2017

11

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Europe PubMed Central

PubMed publication ID

25 June 2017

1

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Europe PubMed Central

PubMed publication ID

25 June 2017

125-130

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Europe PubMed Central

PubMed publication ID

25 June 2017

A structural census of genomes: comparing bacterial, eukaryotic, and archaeal genomes in terms of protein structure

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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Homology-based fold predictions for Mycoplasma genitalium proteins

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Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements

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Fold and function predictions for Mycoplasma genitalium proteins

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Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods

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7 January 2021

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SCOP: a structural classification of proteins database

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Homology among (betaalpha)(8) barrels: implications for the evolution of metabolic pathways

1 reference

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Estimating the number of protein folds and families from complete genome data

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One thousand families for the molecular biologist

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Protein superfamilies and domain superfolds

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Protein fold recognition using sequence profiles and its application in structural genomics

1 reference

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7 January 2021

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Estimating the total number of protein folds

1 reference

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based on heuristic

inferred from DOI database lookup

Detecting protein function and protein-protein interactions from genome sequences

1 reference

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7 January 2021

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Protein interaction maps for complete genomes based on gene fusion events

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Conservation of gene order: a fingerprint of proteins that physically interact

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The use of gene clusters to infer functional coupling

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7 January 2021

based on heuristic

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Gene context conservation of a higher order than operons.

1 reference

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A Genomic Perspective on Protein Families

1 reference

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Measuring genome evolution

1 reference

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Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

1 reference

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Conservation of DNA Regulatory Motifs and Discovery of New Motifs in Microbial Genomes

1 reference

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7 January 2021

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A combined algorithm for genome-wide prediction of protein function

1 reference

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7 January 2021

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Predicting protein function by genomic context: quantitative evaluation and qualitative inferences

1 reference

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7 January 2021

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The human gene mutation database

1 reference

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7 January 2021

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Unified access to mutation databases

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HGBASE: a database of SNPs and other variations in and around human genes

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900175-5

7 January 2021

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dbSNP: a database of single nucleotide polymorphisms

1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

The essence of SNPs

1 reference

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Single-nucleotide polymorphisms can cause different structural folds of mRNA.

1 reference

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Structure of tau exon 10 splicing regulatory element RNA and destabilization by mutations of frontotemporal dementia and parkinsonism linked to chromosome 17

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Inactive conformation of the serpin alpha(1)-antichymotrypsin indicates two-stage insertion of the reactive loop: implications for inhibitory function and conformational disease

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Human apolipoprotein E4 domain interaction. Arginine 61 and glutamic acid 255 interact to direct the preference for very low density lipoproteins

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Structure of the VHL-ElonginC-ElonginB complex: implications for VHL tumor suppressor function

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Structural and functional study of K453E mutant protective protein/cathepsin A causing the late infantile form of galactosialidosis

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Adaptive protein evolution at the Adh locus in Drosophila

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Prediction of deleterious human alleles

1 reference

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SNPs, protein structure, and disease.

1 reference

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Identifiers

10.1016/S0959-440X(00)00175-5

1 reference

Europe PubMed Central

PubMed publication ID

25 June 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

25 June 2017

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