(Q30538009)

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Vibrational normal modes and dynamical stability of DNA triplex poly(dA). 2poly(dT): S-type structure is more stable and in better agreement with observations in solution

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Vibrational normal modes and dynamical stability of DNA triplex poly(dA). 2poly(dT): S-type structure is more stable and in better agreement with observations in solution (English)

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

author name string

Chen YZ

1

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Powell JW

2

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Prohofsky EW

3

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

language of work or name

0 references

publication date

1 March 1997

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Biophysical Journal

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

72

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

3

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

1327-1334

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Determination of protein secondary structure by Fourier transform infrared spectroscopy: a critical assessment

1 reference

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20 June 2018

Equilibrium association constants for oligonucleotide-directed triple helix formation at single DNA sites: linkage to cation valence and concentration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1184515

20 June 2018

Solution structure of a pyrimidine.purine.pyrimidine DNA triplex containing T.AT, C+.GC and G.TA triples

1 reference

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20 June 2018

Solution structure and hydration patterns of a pyrimidine.purine.pyrimidine DNA triplex containing a novel T.CG base-triple

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1184515

20 June 2018

Normal mode calculation of a netropsin-DNA complex: effect of structural deformation on vibrational spectrum.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1184515

20 June 2018

Sequence and temperature dependence of the interbase hydrogen-bond breathing modes in B-DNA polymers: comparison with low-frequency Raman peaks and their role in helix melting.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1184515

20 June 2018

High-resolution structure of a DNA helix forming (C.G)*G base triplets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1184515

20 June 2018

DNA Triplexes: Solution Structures, Hydration Sites, Energetics, Interactions, and Function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1184515

20 June 2018

Structures for the polynucleotide complexes poly(dA) with poly (dT) and poly(dT) with poly(dA) with poly (dT).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1184515

20 June 2018

Triple helix formation by oligopurine-oligopyrimidine DNA fragments. Electrophoretic and thermodynamic behavior

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1184515

20 June 2018

Kinetic analysis of oligodeoxyribonucleotide-directed triple-helix formation on DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1184515

20 June 2018

Thermodynamic characterization of the stability and the melting behavior of a DNA triplex: a spectroscopic and calorimetric study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1184515

20 June 2018

Thermodynamics of triple helix formation: spectrophotometric studies on the d(A)10.2d(T)10 and d(C+3T4C+3).d(G3A4G3).d(C3T4C3) triple helices

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1184515

20 June 2018

Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1184515

20 June 2018

Triple Helical Polynucleotidic Structures: Sugar Conformations Determined by FTIR Spectroscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1184515

20 June 2018

Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degrees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1184515

20 June 2018

Structure of a G.T.A triplet in an intramolecular DNA triplex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1184515

20 June 2018

Prediction of the structure of the Y+.R-.R(+)-type DNA triple helix by molecular modelling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1184515

20 June 2018

Binding of netropsin to a DNA triple helix

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1184515

20 June 2018

Drug binding to higher ordered DNA structures: netropsin complexation with a nucleic acid triple helix

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1184515

20 June 2018

Proton nuclear magnetic resonance assignments and structural characterization of an intramolecular DNA triplex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1184515

20 June 2018

A possible family of B-like triple helix structures: comparison with the Arnott A-like triple helix.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1184515

26 November 2018

Symmetry and molecular structure of a DNA triple helix: d(T)n.d(A)n.d(T)n.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1184515

26 November 2018

Structure of d(T)n.d(A)n.d(T)n: the DNA triple helix has B-form geometry with C2'-endo sugar pucker

1 reference

https://pubmed.ncbi.nlm.nih.gov/9138578

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Near-neighbor effects in cooperative modified self-consistent phonon approximation melting in DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/9138578

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Triple helix-specific ligands

1 reference

https://pubmed.ncbi.nlm.nih.gov/9138578

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interpretation of DNA vibration modes: I--The guanosine and cytidine residues involved in poly(dG-dC).poly(dG-dC) and d(CG)3.d(CG)3

1 reference

https://pubmed.ncbi.nlm.nih.gov/9138578

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sugar conformations in DNA and RNA-DNA triple helices determined by FTIR spectroscopy: role of backbone composition

1 reference

https://pubmed.ncbi.nlm.nih.gov/9138578

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hydrogen-bond melting in B-DNA copolymers in a mean-field self-consistent phonon approach

1 reference

https://pubmed.ncbi.nlm.nih.gov/9138578

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Vibrational modes of A-DNA, B-DNA, and A-RNA backbones: an application of a green-function refinement procedure

1 reference

https://pubmed.ncbi.nlm.nih.gov/9138578

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Three-dimensional homonuclear NOESY-TOCSY of an intramolecular pyrimidine.purine.pyrimidine DNA triplex containing a central G.TA triple: nonexchangeable proton assignments and structural implications

1 reference

https://pubmed.ncbi.nlm.nih.gov/9138578

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Solvent effects on model d(CG.G)7 and d(TA.T)7 DNA triple helices

1 reference

https://pubmed.ncbi.nlm.nih.gov/9138578

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular dynamics simulation of the DNA triplex d(TC)5.d(GA)5.d(C+T)5

1 reference

https://pubmed.ncbi.nlm.nih.gov/9138578

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Observation of the hydration-dependent conformation of the (dG)20.(dG)20(dC)20 oligonucleotide triplex using FTIR spectroscopy

1 reference

https://pubmed.ncbi.nlm.nih.gov/9138578

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/S0006-3495(97)78779-4

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

ResearchGate publication ID

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