(Q30339013)

19 June 2017

title

Evolutionary dynamics of the DNA-binding domains in putative R2R3-MYB genes identified from rice subspecies indica and japonica genomes. (English)

1 reference

19 June 2017

main subject

evolutionary dynamics

1 reference

Li Jia

1 reference

19 June 2017

Michael T Clegg

series ordinal

1 reference

19 June 2017

Tao Jiang

series ordinal

1 reference

19 June 2017

language of work or name

English

0 references

publication date

1 February 2004

1 reference

full work available at URL

19 June 2017

1 reference

inferred from page(s)

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC344534

0 references

published in

Plant Physiology

1 reference

19 June 2017

volume

134

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19 June 2017

1 reference

19 June 2017

page(s)

575-585

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Excess non-synonymous substitutions suggest that positive selection episodes occurred during the evolution of DNA-binding domains in the Arabidopsis R2R3-MYB gene family.

19 June 2017

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1 reference

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Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice

26 November 2018

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Splitting pairs: the diverging fates of duplicated genes

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26 November 2018

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26 November 2018

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26 November 2018

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The R2R3-MYB gene family in Arabidopsis thaliana

26 November 2018

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The Arabidopsis TT2 gene encodes an R2R3 MYB domain protein that acts as a key determinant for proanthocyanidin accumulation in developing seed

26 November 2018

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26 November 2018

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26 November 2018

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A novel jasmonic acid-inducible rice myb gene associates with fungal infection and host cell death

26 November 2018

1 reference

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Developmentally distinct MYB genes encode functionally equivalent proteins in Arabidopsis.

26 November 2018

1 reference

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Rice bioinformatics. analysis of rice sequence data and leveraging the data to other plant species

26 November 2018

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A survey of the molecular evolutionary dynamics of twenty-five multigene families from four grass taxa

26 November 2018

1 reference

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Genome comparisons highlight similarity and diversity within the eukaryotic kingdoms

26 November 2018

1 reference

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The evolutionary fate and consequences of duplicate genes

26 November 2018

1 reference

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Rice transformation for crop improvement and functional genomics.

26 November 2018

1 reference

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Extensive duplication and reshuffling in the Arabidopsis genome

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Co-evolution of proteins with their interaction partners

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

International Rice Genome Sequencing Project: the effort to completely sequence the rice genome

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Multifunctionality and diversity within the plant MYB-gene family

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Transcriptional activation by the myb proteins requires a specific local promoter structure

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

An epigenetic mutation responsible for natural variation in floral symmetry

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Newly discovered plant c-myb-like genes rewrite the evolution of the plant myb gene family.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Interpolated Markov models for eukaryotic gene finding.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Guiding a docking mode by phage display: selection of correlated mutations at the staphylokinase-plasmin interface

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Long-day up-regulation of a GAMYB gene during Lolium temulentum inflorescence formation

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

A role of Ultrabithorax in morphological differences between Drosophila species

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Transcriptional regulators and the evolution of plant form.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Identification of indispensable residues for specific DNA-binding in the imperfect tandem repeats of c-Myb R2R3.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Synonymous and nonsynonymous rate variation in nuclear genes of mammals.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Positive Darwinian selection after gene duplication in primate ribonuclease genes

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Rapid Evolution of a Homeodomain: Evidence for Positive Selection

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Cloning and expression of five myb-related genes from rice seed

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

PAML: a program package for phylogenetic analysis by maximum likelihood

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Structural Plasticity in a Remodeled Protein-Protein Interface

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Cloning of a rice cDNA encoding a transcription factor homologous to barley GAMyb

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

MYB transcription factors in plants

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Episodic adaptive evolution of primate lysozymes

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

One billion years of Myb.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Large-scale search for genes on which positive selection may operate

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Gibberellin-regulated expression of a myb gene in barley aleurone cells: evidence for Myb transactivation of a high-pI alpha-amylase gene promoter

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

fastDNAmL: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Co-evolution of ligand-receptor pairs

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Further examples of evolution by gene duplication revealed through DNA sequence comparisons

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Empirical threshold values for quantitative trait mapping

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

How often do duplicated genes evolve new functions?

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Natural Selection and the Origin of jingwei , a Chimeric Processed Functional Gene in Drosophila

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Role of tryptophan repeats and flanking amino acids in Myb-DNA interactions

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Specific DNA binding by c-Myb: evidence for a double helix-turn-helix-related motif

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Reduction of a conserved Cys is essential for Myb DNA-binding

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=344534

Differences between plant and animal Myb domains are fundamental for DNA binding activity, and chimeric Myb domains have novel DNA binding specificities

26 November 2018

1 reference

12 December 2020

Rapid evolution of goat and sheep globin genes following gene duplication

1 reference

12 December 2020

c-MYB oncogene-like genes encoding three MYB repeats occur in all major plant lineages

1 reference

12 December 2020

Backbone dynamics of the c-Myb DNA-binding domain complexed with a specific DNA

1 reference

12 December 2020

Small-sample tests of episodic adaptive evolution: a case study of primate lysozymes

1 reference

12 December 2020

Gene Duplication and Nucleotide Substitution in Evolution

1 reference

12 December 2020

Proposed structure for the DNA-binding domain of the Myb oncoprotein based on model building and mutational analysis

1 reference

12 December 2020

Molecular evolution of the teosinte branched gene among maize and related grasses

1 reference

12 December 2020

Identifiers

DOI

10.1104/PP.103.027201

1 reference

19 June 2017

0 references

1 reference