(Q30336320)

19 September 2017

Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins. (English)

1 reference

19 September 2017

1 reference

PubMed publication ID

19 June 2017

Susan Jones

0 references

Helen M Berman

1 reference

19 September 2017

Hugh P Shanahan

1 reference

PMC publication ID

291864

19 September 2017

language of work or name

English

0 references

publication date

1 December 2003

1 reference

19 September 2017

Nucleic Acids Research

1 reference

19 September 2017

1 reference

19 September 2017

1 reference

19 September 2017

7189-7198

1 reference

Using structural motif templates to identify proteins with DNA binding function

19 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=291864

Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=291864

Annotating nucleic acid-binding function based on protein structure.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=291864

TATA element recognition by the TATA box-binding protein has been conserved throughout evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=291864

Crystal structure of MunI restriction endonuclease in complex with cognate DNA at 1.7 A resolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=291864

Structure of the DNA repair enzyme endonuclease IV and its DNA complex: double-nucleotide flipping at abasic sites and three-metal-ion catalysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=291864

DNA polymerases: structural diversity and common mechanisms

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=291864

Protein-DNA interactions: A structural analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=291864

Structural features of protein-nucleic acid recognition sites

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=291864

Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=291864

Structure of Taq polymerase with DNA at the polymerase active site

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=291864

Principles of protein-protein interactions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=291864

DNA binding specificity of the EcoRV restriction endonuclease is increased by Mg2+ binding to a metal ion binding site distinct from the catalytic center of the enzyme.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=291864

RASMOL: biomolecular graphics for all

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=291864

Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=291864

DNase I-induced DNA conformation. 2 A structure of a DNase I-octamer complex

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=291864

Refined 1.8 A crystal structure of the lambda repressor-operator complex

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=291864

The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=291864

PFDB: a generic protein family database integrating the CATH domain structure database with sequence based protein family resources

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=291864

Protein-DNA interactions: amino acid conservation and the effects of mutations on binding specificity

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=291864

Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=291864

Protein-protein interfaces: analysis of amino acid conservation in homodimers

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=291864

Prediction of protein-protein interaction sites using patch analysis

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=291864

Hydrophobic patches on protein subunit interfaces: characteristics and prediction

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/14654694

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Dissecting the metal ion dependence of DNA binding by PvuII endonuclease

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/14654694

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

1 reference

https://pubmed.ncbi.nlm.nih.gov/14654694

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKG922

1 reference

19 September 2017

1 reference

PMC publication ID

291864

19 September 2017

PubMed publication ID

14654694

1 reference

PMC publication ID

291864