(Q28469232)

0 references

Brian W Busser

0 references

Fangxue Sherry He

0 references

Beatriz Estrada

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Alan M Michelson

PLOS Computational Biology

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language of work or name

English

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publication date

May 2006

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published in

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volume

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issue

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page(s)

e53

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Creative Commons Attribution 4.0 International

start time

26 May 2006

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

cites work

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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

19 March 2017

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MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model

19 March 2017

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Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura

19 March 2017

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Transcriptional control in the segmentation gene network of Drosophila

19 March 2017

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The regulatory content of intergenic DNA shapes genome architecture

19 March 2017

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Conservation of regulatory elements between two species of Drosophila

19 March 2017

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Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo

19 March 2017

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Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

19 March 2017

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Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo

19 March 2017

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Identifying regulatory networks by combinatorial analysis of promoter elements

19 March 2017

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Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

19 March 2017

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Cluster analysis and display of genome-wide expression patterns

19 March 2017

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Transcriptional integration of competence modulated by mutual repression generates cell-type specificity within the cardiogenic mesoderm

19 March 2017

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Java Treeview--extensible visualization of microarray data

19 March 2017

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PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes

7 April 2017

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Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation

7 April 2017

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Genome-wide prediction of mammalian enhancers based on analysis of transcription-factor binding affinity

7 April 2017

1 reference

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The role of binding site cluster strength in Bicoid-dependent patterning in Drosophila.

29 September 2017

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Modulefinder: a tool for computational discovery of cis regulatory modules

29 September 2017

1 reference

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Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays.

29 September 2017

1 reference

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Multiplex detection of RNA expression in Drosophila embryos

29 September 2017

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Homotypic regulatory clusters in Drosophila.

29 September 2017

1 reference

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Whole-genome analysis of dorsal-ventral patterning in the Drosophila embryo

29 September 2017

1 reference

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SCORE: a computational approach to the identification of cis-regulatory modules and target genes in whole-genome sequence data. Site clustering over random expectation.

29 September 2017

1 reference

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Computation-based discovery of related transcriptional regulatory modules and motifs using an experimentally validated combinatorial model

29 September 2017

1 reference

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Detection of cis-element clusters in higher eukaryotic DNA.

29 September 2017

1 reference

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Invertebrate myogenesis: looking back to the future of muscle development

29 September 2017

1 reference

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Combinatorial signaling codes for the progressive determination of cell fates in the Drosophila embryonic mesoderm

29 September 2017

1 reference

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inscuteable and numb mediate asymmetric muscle progenitor cell divisions during Drosophila myogenesis

29 September 2017

1 reference

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Lethal of scute, a proneural gene, participates in the specification of muscle progenitors during Drosophila embryogenesis

29 September 2017

1 reference

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A regulatory code for neurogenic gene expression in the Drosophila embryo

29 September 2017

1 reference

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The role of the NK-homeobox gene slouch (S59) in somatic muscle patterning

2 June 2018

1 reference

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Identification of regulatory regions which confer muscle-specific gene expression.

2 June 2018

1 reference

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The Drosophila gene pointed encodes two ETS-like proteins which are involved in the development of the midline glial cells

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1464814

The ETS domain protein pointed-P2 is a target of MAP kinase in the sevenless signal transduction pathway

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1464814

Lateral inhibition in proneural clusters: cis-regulatory logic and default repression by Suppressor of Hairless

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1464814

Genetic programs activated by proneural proteins in the developing Drosophila PNS.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1464814

Genomic cis-regulatory architecture and trans-acting regulators of a single interneuron-specific gene battery in C. elegans

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1464814

Predicting gene expression from sequence

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1464814

Modifiers of muscle and heart cell fate specification identified by gain-of-function screen in Drosophila

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1464814

Jeb signals through the Alk receptor tyrosine kinase to drive visceral muscle fusion.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1464814

Jelly belly protein activates the receptor tyrosine kinase Alk to specify visceral muscle pioneers.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1464814

A probabilistic method to detect regulatory modules

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1464814

Reciprocal regulatory interactions between the Notch and Ras signaling pathways in the Drosophila embryonic mesoderm.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1464814

Molecular integration of inductive and mesoderm-intrinsic inputs governs even-skipped enhancer activity in a subset of pericardial and dorsal muscle progenitors

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1464814

Ras pathway specificity is determined by the integration of multiple signal-activated and tissue-restricted transcription factors.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1464814

Human-mouse genome comparisons to locate regulatory sites

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1464814

Yan functions as a general inhibitor of differentiation and is negatively regulated by activation of the Ras1/MAPK pathway.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1464814

ladybird determines cell fate decisions during diversification of Drosophila somatic muscles

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16733548

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.0020053

1 reference

journals/ploscb/PhilippakisBGHEMB06

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

1 reference

PubMed publication ID

16733548

1 reference