(Q27939876)

19652015

1 December 2016

title

Distinguishing direct versus indirect transcription factor-DNA interactions (English)

1 reference

PubMed

19652015

1 December 2016

author

Alexander J Hartemink

series ordinal

object named as

Alexander J Hartemink

0 references

Martha L Bulyk

series ordinal

object named as

Martha L Bulyk

0 references

author name string

Raluca Gordân

0 references

language of work or name

English

0 references

publication date

November 2009

0 references

1 reference

A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors

1 December 2016

0 references

2090-100

0 references

cites work

1 reference

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20 March 2017

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A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters

20 March 2017

1 reference

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Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation

20 March 2017

1 reference

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Potential interface between ribosomal protein production and pre-rRNA processing

20 March 2017

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Regulation of mating and filamentation genes by two distinct Ste12 complexes in Saccharomyces cerevisiae

20 March 2017

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Explicit equilibrium modeling of transcription-factor binding and gene regulation.

20 March 2017

1 reference

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Central role of Ifh1p-Fhl1p interaction in the synthesis of yeast ribosomal proteins

20 March 2017

1 reference

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Growth-regulated recruitment of the essential yeast ribosomal protein gene activator Ifh1.

20 March 2017

1 reference

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Sfp1 is a stress- and nutrient-sensitive regulator of ribosomal protein gene expression

20 March 2017

1 reference

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Transcriptional regulatory code of a eukaryotic genome

20 March 2017

1 reference

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Sfp1 plays a key role in yeast ribosome biogenesis

20 March 2017

1 reference

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Sum1 and Ndt80 proteins compete for binding to middle sporulation element sequences that control meiotic gene expression

20 March 2017

1 reference

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Mechanisms controlling differential promoter-occupancy by the yeast forkhead proteins Fkh1p and Fkh2p: implications for regulating the cell cycle and differentiation

20 March 2017

1 reference

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Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association

20 March 2017

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A role for the transcription factors Mbp1 and Swi4 in progression from G1 to S phase.

20 March 2017

1 reference

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Genome-wide location and function of DNA binding proteins

20 March 2017

1 reference

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Assessing computational tools for the discovery of transcription factor binding sites

20 March 2017

1 reference

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Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities

20 March 2017

1 reference

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Genome-wide mapping of in vivo protein-DNA interactions

7 April 2017

1 reference

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Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF

7 April 2017

1 reference

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A global map of p53 transcription-factor binding sites in the human genome

7 April 2017

1 reference

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SGD: Saccharomyces Genome Database

7 April 2017

1 reference

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Diversity and complexity in DNA recognition by transcription factors

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775597

The DNA-encoded nucleosome organization of a eukaryotic genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775597

Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775597

A high-resolution atlas of nucleosome occupancy in yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775597

Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775597

Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775597

Extensive low-affinity transcriptional interactions in the yeast genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775597

Fine-structure analysis of ribosomal protein gene transcription

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775597

An improved map of conserved regulatory sites for Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775597

The transcription factor Ifh1 is a key regulator of yeast ribosomal protein genes.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775597

Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775597

Comparison of ABF1 and RAP1 in chromatin opening and transactivator potentiation in the budding yeast Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775597

Exploring the DNA-binding specificities of zinc fingers with DNA microarrays

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775597

Characterization of the DNA-binding domains from the yeast cell-cycle transcription factors Mbp1 and Swi4.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775597

Saccharomyces cerevisiae SFP1: at the crossroads of central metabolism and ribosome biogenesis.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775597

Predicting transcription factor affinities to DNA from a biophysical model

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775597

Reb1p-dependent DNA bending effects nucleosome positioning and constitutive transcription at the yeast profilin promoter.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775597

Multifunctional DNA-binding proteins mediate concerted transcription activation of yeast ribosomal protein genes

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19652015

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.094144.109

1 reference

1 reference

1 reference

19652015

1 reference