(Q27933736)

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Involvement of DEAD-box proteins in group I and group II intron splicing. Biochemical characterization of Mss116p, ATP hydrolysis-dependent and -independent mechanisms, and general RNA chaperone activity

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PubMed publication ID

1 December 2016

Involvement of DEAD-box proteins in group I and group II intron splicing. Biochemical characterization of Mss116p, ATP hydrolysis-dependent and -independent mechanisms, and general RNA chaperone activity (English)

1 reference

PubMed publication ID

1 December 2016

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molecular chaperones

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ATP-dependent RNA helicase YDR194C

1 reference

GOA release 2020-03-11

Eckhard Jankowsky

5

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author name string

Coralie Halls

1

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Sabine Mohr

2

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Mark Del Campo

3

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Quansheng Yang

4

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Alan M Lambowitz

6

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language of work or name

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publication date

19 January 2007

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Journal of Molecular Biology

1 reference

PubMed publication ID

1 December 2016

365

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3

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835-55

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describes a project that uses

1 reference

Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC1832103/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

Discriminatory RNP remodeling by the DEAD-box protein DED1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

20 March 2017

ATP- and ADP-dependent modulation of RNA unwinding and strand annealing activities by the DEAD-box protein DED1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

20 March 2017

The splicing of yeast mitochondrial group I and group II introns requires a DEAD-box protein with RNA chaperone function

1 reference

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20 March 2017

The p20 and Ded1 proteins have antagonistic roles in eIF4E-dependent translation in Saccharomyces cerevisiae.

1 reference

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20 March 2017

Requirement of the DEAD-Box protein ded1p for messenger RNA translation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

20 March 2017

Mitochondrial splicing requires a protein from a novel helicase family

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

20 March 2017

A maturase-encoding group IIA intron of yeast mitochondria self-splices in vitro

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

20 March 2017

Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications

1 reference

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20 March 2017

Group II introns: structure and catalytic versatility of large natural ribozymes

1 reference

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20 March 2017

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1 reference

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20 March 2017

Strategies for RNA folding and assembly

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

20 March 2017

A group II intron RNA is a catalytic component of a DNA endonuclease involved in intron mobility

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

20 March 2017

Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

7 April 2017

The DEAD-box protein family of RNA helicases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

7 April 2017

DEAD-box proteins: the driving forces behind RNA metabolism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

7 April 2017

DExD/H box RNA helicases: from generic motors to specific dissociation functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

7 April 2017

Nonspecific binding to structured RNA and preferential unwinding of an exposed helix by the CYT-19 protein, a DEAD-box RNA chaperone

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

29 September 2017

Remodeling of ribonucleoprotein complexes with DExH/D RNA helicases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

29 September 2017

A DEAD-box protein alone promotes group II intron splicing and reverse splicing by acting as an RNA chaperone

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

29 September 2017

The newly discovered Q motif of DEAD-box RNA helicases regulates RNA-binding and helicase activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

29 September 2017

DExD/H-box proteins and their partners: helping RNA helicases unwind

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

29 September 2017

Yeast RNA helicases of the DEAD-box family involved in translation initiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

29 September 2017

Group II introns: highly specific endonucleases with modular structures and diverse catalytic functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

29 September 2017

RNA: versatility in form and function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

29 September 2017

A bacterial group II intron encoding reverse transcriptase, maturase, and DNA endonuclease activities: biochemical demonstration of maturase activity and insertion of new genetic information within the intron

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

29 September 2017

Stopped-flow fluorescence spectroscopy of a group II intron ribozyme reveals that domain 1 is an independent folding unit with a requirement for specific Mg2+ ions in the tertiary structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

29 September 2017

RNA chaperones and the RNA folding problem

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

29 September 2017

Mechanistic studies of ribonucleic acid renaturation by a helix-destabilizing protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

29 September 2017

Diffusion-controlled macromolecular interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

29 September 2017

Catalytic activity is retained in the Tetrahymena group I intron despite removal of the large extension of element P5.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

29 September 2017

Renaturation of complementary DNA strands mediated by purified mammalian heterogeneous nuclear ribonucleoprotein A1 protein: implications for a mechanism for rapid molecular assembly

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

29 September 2017

A DEAD-box protein functions as an ATP-dependent RNA chaperone in group I intron splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

2 June 2018

Protein-facilitated RNA folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

2 June 2018

A protein required for splicing group I introns in Neurospora mitochondria is mitochondrial tyrosyl-tRNA synthetase or a derivative thereof

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

2 June 2018

Structural analysis of the Neurospora mitochondrial large rRNA intron and construction of a mini-intron that shows protein-dependent splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

2 June 2018

Protein displacement by DExH/D "RNA helicases" without duplex unwinding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

27 November 2018

Preliminary structure analysis of the DH/PH domains of leukemia-associated RhoGEF.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

27 November 2018

Discrimination of ATP, ADP, and AMPPNP by chaperonin GroEL: hexokinase treatment revealed the exclusive role of ATP.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

27 November 2018

Productive folding to the native state by a group II intron ribozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

27 November 2018

Transposition and exon shuffling by group II intron RNA molecules in pieces

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

27 November 2018

The DExH protein NPH-II is a processive and directional motor for unwinding RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

27 November 2018

The DEAD box protein eIF4A. 2. A cycle of nucleotide and RNA-dependent conformational changes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

27 November 2018

The DEAD box protein eIF4A. 1. A minimal kinetic and thermodynamic framework reveals coupled binding of RNA and nucleotide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832103

27 November 2018

A tyrosyl-tRNA synthetase protein induces tertiary folding of the group I intron catalytic core

1 reference

https://pubmed.ncbi.nlm.nih.gov/17081564

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Biochemical and kinetic characterization of the RNA helicase activity of eukaryotic initiation factor 4A

1 reference

https://pubmed.ncbi.nlm.nih.gov/17081564

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A tyrosyl-tRNA synthetase adapted to function in group I intron splicing by acquiring a new RNA binding surface

1 reference

https://pubmed.ncbi.nlm.nih.gov/17081564

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNA splicing in Neurospora mitochondria. Characterization of new nuclear mutants with defects in splicing the mitochondrial large rRNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/17081564

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Group II intron self-splicing. Alternative reaction conditions yield novel products

1 reference

https://pubmed.ncbi.nlm.nih.gov/17081564

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A tyrosyl-tRNA synthetase can function similarly to an RNA structure in the Tetrahymena ribozyme

1 reference

https://pubmed.ncbi.nlm.nih.gov/17081564

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Two competing pathways for self-splicing by group II introns: a quantitative analysis of in vitro reaction rates and products

1 reference

https://pubmed.ncbi.nlm.nih.gov/17081564

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/J.JMB.2006.09.083

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PMC publication ID

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PubMed publication ID

1 reference

PubMed publication ID

1 December 2016

ResearchGate publication ID

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