(Q27309988)

26 June 2017

title

Convergence of methods for coupling of microscopic and mesoscopic reaction-diffusion simulations (English)

1 reference

26 June 2017

Mark B Flegga

1 reference

26 June 2017

Stefan Hellander

series ordinal

1 reference

26 June 2017

Radek Erban

series ordinal

1 reference

26 June 2017

publication date

1 May 2015

1 reference

Journal of Computational Physics

26 June 2017

published in

1 reference

26 June 2017

volume

289

1 reference

26 June 2017

page(s)

1-17

1 reference

maintained by WikiProject

26 June 2017

WikiProject Mathematics

0 references

cites work

Hybrid spatial Gillespie and particle tracking simulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4639942

URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4639942

Spatio-temporal correlations can drastically change the response of a MAPK pathway

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4639942

Stochastic reaction-diffusion simulation with MesoRD.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4639942

From molecular dynamics to Brownian dynamics

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4639942

The two-regime method for optimizing stochastic reaction-diffusion simulations

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4639942

Adaptive two-regime method: application to front propagation.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4639942

Multiscale stochastic reaction-diffusion modeling: application to actin dynamics in filopodia

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4639942

Diffusive spatio-temporal noise in a first-passage time model for intracellular calcium release

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4639942

Stochastic modelling of reaction-diffusion processes: algorithms for bimolecular reactions

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4639942

Reactive boundary conditions for stochastic simulations of reaction-diffusion processes.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4639942

Green's-function reaction dynamics: a particle-based approach for simulating biochemical networks in time and space

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4639942

Stochastic simulation of chemical reactions with spatial resolution and single molecule detail.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4639942

Hybrid computations with flux exchange

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4639942

Interfacing Brownian dynamics simulations

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4639942

Brownian dynamics simulations of simplified cytochrome c molecules in the presence of a charged surface

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4639942

Hybrid method for simulating front propagation in reaction-diffusion systems.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4639942

Coupling particles and fields in a diffusive hybrid model.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4639942

Concurrent triple-scale simulation of molecular liquids

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26568640

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.JCP.2015.01.030

1 reference

26 June 2017

DBLP publication ID

journals/jcphy/FleggHE15

1 reference

DBLP Dataset 2021-01-02

release_7t2mn2ilbbd53do2fnuhqeqnlu

28 January 2021

Fatcat ID

0 references

PMC publication ID

4639942

0 references

1 reference