(Q24811197)

4 July 2017

title

Quenched autoligation probes allow discrimination of live bacterial species by single nucleotide differences in rRNA. (English)

1 reference

4 July 2017

Eric T Kool

1 reference

4 July 2017

Adam P Silverman

1 reference

4 July 2017

language of work or name

English

0 references

publication date

2 September 2005

1 reference

4 July 2017

published in

Nucleic Acids Research

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4 July 2017

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4 July 2017

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4 July 2017

page(s)

4978-4986

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The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis

4 July 2017

cites work

1 reference

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Detection and quantification of gene expression in environmental bacteriology

7 April 2017

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Multiple sequence alignment with the Clustal series of programs

7 April 2017

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Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18

7 April 2017

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Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen

7 April 2017

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The complete genome sequence of Escherichia coli K-12

7 April 2017

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Molecular beacons: probes that fluoresce upon hybridization

7 April 2017

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Templated metal catalysis for single nucleotide specific DNA sequence detection

7 April 2017

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Quenched probes for highly specific detection of cellular RNAs

28 September 2017

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Single-nucleotide-specific PNA-peptide ligation on synthetic and PCR DNA templates

28 September 2017

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Two sides of the coin: affinity and specificity of nucleic acid interactions

28 September 2017

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Dual FRET molecular beacons for mRNA detection in living cells

28 September 2017

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Quenched auto-ligating DNAs: multicolor identification of nucleic acids at single nucleotide resolution

28 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1199560

Use of DNA and peptide nucleic acid molecular beacons for detection and quantification of rRNA in solution and in whole cells

28 September 2017

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Fluorescence in situ hybridization: past, present and future

28 September 2017

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In situ accessibility of small-subunit rRNA of members of the domains Bacteria, Archaea, and Eucarya to Cy3-labeled oligonucleotide probes

28 September 2017

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Hybridization of 2'-O-methyl and 2'-deoxy molecular beacons to RNA and DNA targets

28 September 2017

1 reference

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Real-time monitoring of intracellular mRNA hybridization inside single living cells

28 September 2017

1 reference

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Linear 2' O-Methyl RNA probes for the visualization of RNA in living cells.

28 September 2017

1 reference

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Application of rRNA-targeted oligonucleotide probes in biotechnology

28 September 2017

1 reference

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The identification of microorganisms by fluorescence in situ hybridisation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1199560

In situ accessibility of Escherichia coli 23S rRNA to fluorescently labeled oligonucleotide probes

28 September 2017

1 reference

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Ribosomal RNA-targeted nucleic acid probes for studies in microbial ecology

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1199560

Fluorescence in situ hybridization (FISH) for direct visualization of microorganisms.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1199560

Using molecular beacons to probe molecular interactions between lactate dehydrogenase and single-stranded DNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1199560

Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1199560

Rapid identification of bacteria in blood cultures by using fluorescently labeled oligonucleotide probes.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1199560

The European small subunit ribosomal RNA database

28 September 2017

1 reference

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High sequence fidelity in a non-enzymatic DNA autoligation reaction

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1199560

Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes.

28 September 2017

1 reference

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Real time detection of DNA.RNA hybridization in living cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1199560

Characterization of fully 2'-modified oligoribonucleotide hetero- and homoduplex hybridization and nuclease sensitivity

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1199560

Antibiotic resistance mutations in 16S and 23S ribosomal RNA genes ofEscherichia coli

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1199560

Mutations in 16S ribosomal RNA disrupt antibiotic--RNA interactions.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1199560

Detection of Salmonella strains and Escherichia coli O157:H7 in feces of small ruminants and their isolation with various media

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1199560

Nucleic acid-triggered fluorescent probe activation by the Staudinger reaction

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1199560

Destabilizing universal linkers for signal amplification in self-ligating probes for RNA.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1199560

Comparison of real-time PCR methods for detection of Salmonella enterica and Escherichia coli O157:H7, and introduction of a general internal amplification control

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1199560

Amplified nucleic acid sensing using programmed self-cleaving DNAzyme.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1199560

Imaging of RNA in bacteria with self-ligating quenched probes

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1199560

Quencher as leaving group: efficient detection of DNA-joining reactions.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1199560

Pseudomonas putida: a cosmopolitan opportunist par excellence

28 November 2018

1 reference

12 December 2020

Nonenzymatic autoligation in direct three-color detection of RNA and DNA point mutations

1 reference

12 December 2020

Multicolor molecular beacons for allele discrimination

1 reference

12 December 2020

A Convergent Strategy for the Modification of Peptide Nucleic Acids: Novel Mismatch-Specific PNA-Hybridization Probes

1 reference

12 December 2020

Ribosomal RNA-targeted nucleic acid probes for studies in microbial ecology

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKI814

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1093/NAR/GKI814

1 reference

4 July 2017

1 reference

4 July 2017

1 reference