(Q101217312)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33144944%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

title

Genome structure and content of the rice root-knot nematode (Meloidogyne graminicola) (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33144944%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

main subject

Meloidogyne graminicola

object named as

Meloidogyne graminicola

1 reference

1 reference

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6 November 2020

1 reference

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6 November 2020

1 reference

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6 November 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33144944%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33144944%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Georgios D Koutsovoulos

1 reference

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6 November 2020

1 reference

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6 November 2020

1 reference

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6 November 2020

Laetitia Perfus-Barbeoch

object named as

Laetitia Perfus-Barbeoch

1 reference

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6 November 2020

Céline Lopez-Roques

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33144944%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Olivier Bouchez

1 reference

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6 November 2020

Margot Zahm

1 reference

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6 November 2020

publication date

13 September 2020

1 reference

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6 November 2020

number of pages

1 reference

inferred from page(s)

published in

Ecology and Evolution

1 reference

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6 November 2020

volume

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6 November 2020

issue

1 reference

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6 November 2020

page(s)

11006-11021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33144944%20AND%20SRC:MED&resulttype=core&format=json

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

6 November 2020

cites work

1 reference

7 January 2021

Basic local alignment search tool

1 reference

7 January 2021

Splicing in Caenorhabditis elegans does not require an AG at the 3' splice acceptor site

1 reference

7 January 2021

Heterodera glycines utilizes promiscuous spliced leaders and demonstrates a unique preference for a species-specific spliced leader over C. elegans SL1

1 reference

7 January 2021

Intraspecific variability of the facultative meiotic parthenogenetic root-knot nematode (Meloidogyne graminicola) from rice fields in Vietnam.

1 reference

7 January 2021

1 reference

7 January 2021

The genomes of root-knot nematodes.

1 reference

7 January 2021

Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes.

1 reference

7 January 2021

Transposable elements and microevolutionary changes in natural populations

1 reference

7 January 2021

Analysis of Drosophila species genome size and satellite DNA content reveals significant differences among strains as well as between species

1 reference

7 January 2021

Genome Annotation and Curation Using MAKER and MAKER-P

1 reference

7 January 2021

Parasitic success without sex – the nematode experience

1 reference

7 January 2021

Diversity and evolution of root-knot nematodes, genus Meloidogyne: new insights from the genomic era.

1 reference

7 January 2021

A novel Meloidogyne graminicola effector, MgMO237, interacts with multiple host defence-related proteins to manipulate plant basal immunity and promote parasitism.

1 reference

7 January 2021

Lateral gene transfers have polished animal genomes: lessons from nematodes

1 reference

7 January 2021

Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes

1 reference

7 January 2021

Horizontal Gene Transfer from Bacteria Has Enabled the Plant-Parasitic Nematode Globodera pallida to Feed on Host-Derived Sucrose.

1 reference

7 January 2021

Spliced leader RNA trans-splicing in metazoa

1 reference

7 January 2021

NanoPack: visualizing and processing long-read sequencing data

1 reference

7 January 2021

The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence.

1 reference

7 January 2021

Considering transposable element diversification in de novo annotation approaches

1 reference

7 January 2021

Full-length transcriptome assembly from RNA-Seq data without a reference genome

1 reference

7 January 2021

Tm1: a mutator/foldback transposable element family in root-knot nematodes

1 reference

7 January 2021

QUAST: quality assessment tool for genome assemblies

1 reference

7 January 2021

Horizontal gene transfer in nematodes: a catalyst for plant parasitism?

1 reference

7 January 2021

Carboxylesterases: General detoxifying enzymes

1 reference

7 January 2021

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

1 reference

7 January 2021

Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads

1 reference

7 January 2021

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads.

1 reference

7 January 2021

HISAT: a fast spliced aligner with low memory requirements

1 reference

7 January 2021

Assembly of long, error-prone reads using repeat graphs

1 reference

7 January 2021

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

1 reference

7 January 2021

Gene finding in novel genomes

1 reference

7 January 2021

A natural barrier to lateral gene transfer from prokaryotes to eukaryotes revealed from genomes: the 70 % rule

1 reference

7 January 2021

Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots

1 reference

7 January 2021

BlobTools: Interrogation of genome assemblies

1 reference

7 January 2021

Fast gapped-read alignment with Bowtie 2

1 reference

7 January 2021

Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences

1 reference

7 January 2021

Minimap2: pairwise alignment for nucleotide sequences

1 reference

7 January 2021

The Sequence Alignment/Map format and SAMtools

1 reference

7 January 2021

Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data

1 reference

7 January 2021

Intron creation and polyadenylation in maize are directed by AU-rich RNA.

1 reference

7 January 2021

The complex hybrid origins of the root knot nematodes revealed through comparative genomics

1 reference

7 January 2021

Meloidogyne graminicola: a major threat to rice agriculture.

1 reference

7 January 2021

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

1 reference

7 January 2021

The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes

1 reference

7 January 2021

Rooibos (Aspalathus linearis) Genome Size Estimation Using Flow Cytometry and K-Mer Analyses

1 reference

7 January 2021

The Meloidogyne graminicola effector Mg16820 is secreted in the apoplast and cytoplasm to suppress plant host defense responses

1 reference

7 January 2021

BEDOPS: high-performance genomic feature operations

1 reference

7 January 2021

Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism

1 reference

7 January 2021

Contribution of lateral gene transfers to the genome composition and parasitic ability of root-knot nematodes

1 reference

7 January 2021

CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

1 reference

7 January 2021

Elucidating the molecular bases of epigenetic inheritance in non-model invertebrates: the case of the root-knot nematode Meloidogyne incognita.

1 reference

7 January 2021

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

1 reference

7 January 2021

Dual RNA-seq reveals Meloidogyne graminicola transcriptome and candidate effectors during the interaction with rice plants

1 reference

7 January 2021

BEDTools: a flexible suite of utilities for comparing genomic features

1 reference

7 January 2021

Alienness: Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life.

1 reference

7 January 2021

Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies

1 reference

7 January 2021

Function of a laminin_G_3 module as a carbohydrate-binding module in an arabinofuranosidase from Ruminiclostridium josui

1 reference

7 January 2021

Horizontally transferred genes in plant-parasitic nematodes: a high-throughput genomic approach

1 reference

7 January 2021

The Role of Transposable Elements in Speciation.

1 reference

7 January 2021

Transcriptome analysis of root-knot nematode (Meloidogyne incognita)-infected tomato (Solanum lycopersicum) roots reveals complex gene expression profiles and metabolic networks of both host and nematode during susceptible and resistance responses

1 reference

7 January 2021

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

1 reference

7 January 2021

Nematode Genome Announcement: A Draft Genome for Rice Root-Knot Nematode, Meloidogyne graminicola

1 reference

7 January 2021

Genome sequence of the root-knot nematode Meloidogyne luci

1 reference

7 January 2021

Comparative Genomics of Apomictic Root-Knot Nematodes: Hybridization, Ploidy, and Dynamic Genome Change

1 reference

7 January 2021

Genome sequence of the nematode C. elegans: a platform for investigating biology

1 reference

7 January 2021

Meloidogyne graminicola protein disulfide isomerase may be a nematode effector and is involved in protection against oxidative damage

1 reference

7 January 2021

A phylogenetic tree of nematodes based on about 1200 full-length small subunit ribosomal DNA sequences

1 reference

7 January 2021

Fast and accurate de novo genome assembly from long uncorrected reads.

1 reference

7 January 2021

Bacterial peptidoglycan (murein) hydrolases

1 reference

7 January 2021

GenomeScope: Fast reference-free genome profiling from short reads.

1 reference

7 January 2021

Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement

1 reference

7 January 2021

InterProScan--an integration platform for the signature-recognition methods in InterPro

1 reference

7 January 2021

The Role of Sugar Transporter Genes during Early Infection by Root-Knot Nematodes.

1 reference

7 January 2021

A Meloidogyne graminicola C-type lectin, Mg01965 is secreted into the host apoplast to suppress plant defense and promote parasitism

1 reference

7 January 2021

The MaSuRCA genome assembler

1 reference

7 January 2021