(Q60923455)

English

miRBaseConverter: an R/Bioconductor package for converting and retrieving miRNA name, accession, sequence and family information in different versions of miRBase

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scholarly article

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miRBaseConverter: an R/Bioconductor package for converting and retrieving miRNA name, accession, sequence and family information in different versions of miRBase (English)

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1 reference

based on heuristic

inferred from name or label

7 September 2021

object named as

Thuc Duy Le

10

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object named as

Jiuyong Li

9

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object named as

Junpeng Zhang

4

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author name string

Taosheng Xu

1

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Ning Su

2

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Lin Liu

3

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Hongqiang Wang

5

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Weijia Zhang

6

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Jie Gui

7

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Kui Yu

8

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language of work or name

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publication date

31 December 2018

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BMC Bioinformatics

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19

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Suppl 19

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514

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copyright license

Creative Commons Attribution 4.0 International

1 December 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

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describes a project that uses

object named as

Cytoscape

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Identification of p53 as a sequence-specific DNA-binding protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A uniform system for microRNA annotation

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cytoscape: a software environment for integrated models of biomolecular interaction networks

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MicroRNAs: genomics, biogenesis, mechanism, and function

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The functions of animal microRNAs

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bioconductor: open software development for computational biology and bioinformatics

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

GeneRank: using search engine technology for the analysis of microarray experiments

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

miRBase: microRNA sequences, targets and gene nomenclature

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MicroRNA signatures in human cancers

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

TRED: a transcriptional regulatory element database, new entries and other development

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

miRBase: tools for microRNA genomics

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

miRDB: a microRNA target prediction and functional annotation database with a wiki interface

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

TransmiR: a transcription factor-microRNA regulation database

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mammalian microRNAs predominantly act to decrease target mRNA levels

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

miRBase: integrating microRNA annotation and deep-sequencing data

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene silencing by microRNAs: contributions of translational repression and mRNA decay

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

miRSystem: an integrated system for characterizing enriched functions and pathways of microRNA targets

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Architecture of the human regulatory network derived from ENCODE data

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

miRandola: extracellular circulating microRNAs database

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

miRBase: annotating high confidence microRNAs using deep sequencing data

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A network-assisted co-clustering algorithm to discover cancer subtypes based on gene expression

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Drugging the p53 pathway: understanding the route to clinical efficacy

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

TCGA-assembler: open-source software for retrieving and processing TCGA data

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

miRBase Tracker: keeping track of microRNA annotation changes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MicroRNAs in B-cell lymphomas: how a complex biology gets more complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

miRiadne: a web tool for consistent integration of miRNA nomenclature.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MicroRNA biogenesis pathways in cancer

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Predicting effective microRNA target sites in mammalian mRNAs

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

miRLAB: An R Based Dry Lab for Exploring miRNA-mRNA Regulatory Relationships

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifying Cancer Subtypes from miRNA-TF-mRNA Regulatory Networks and Expression Data

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

miEAA: microRNA enrichment analysis and annotation

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

miRNAmeConverter: an R/bioconductor package for translating mature miRNA names to different miRBase versions.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

TP53 mutations, expression and interaction networks in human cancers

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30598108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/S12859-018-2531-5

0 references

DBLP publication ID

journals/bmcbi/XuSLZWZGYLL18

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

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PMC publication ID

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PubMed publication ID

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Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

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