(Q56999449)

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Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins

scientific article published on 01 January 1999

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10336385%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins (English)

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10336385%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

molecular biology

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structural biology

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protein structure

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object named as

David Baker

6

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Charles Kooperberg

3

object named as

Charles Kooperberg

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4

1 reference

Europe PubMed Central

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8 December 2019

6

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8 December 2019

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Kim T. Simons

1

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Ingo Ruczinski

2

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Brian A. Fox

4

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Chris Bystroff

5

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K T Simons

1

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8 December 2019

I Ruczinski

2

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8 December 2019

C Kooperberg

3

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8 December 2019

C Bystroff

5

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8 December 2019

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1 January 1999

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8 December 2019

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8 December 2019

34

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8 December 2019

1

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8 December 2019

82-95

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8 December 2019

The Protein Data Bank: a computer-based archival file for macromolecular structures

1 reference

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Prediction of local structure in proteins using a library of sequence-structure motifs

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An all-atom distance-dependent conditional probability discriminatory function for protein structure prediction

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A novel super-secondary structure of proteins and the relation between the structure and the amino acid sequence

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Coordination geometry of nonbonded residues in globular proteins

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Packing of secondary structural elements in proteins. Analysis and prediction of inter-helix distances

1 reference

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Rebuilding flavodoxin from C alpha coordinates: a test study

1 reference

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The anatomy and taxonomy of protein structure

1 reference

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Energy functions that discriminate X-ray and near native folds from well-constructed decoys

1 reference

9 October 2024

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Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading.

1 reference

9 October 2024

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Enlarged representative set of protein structures

1 reference

9 October 2024

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Identifying the tertiary fold of small proteins with different topologies from sequence and secondary structure using the genetic algorithm and extended criteria specific for strand regions.

1 reference

9 October 2024

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Database algorithm for generating protein backbone and side-chain co-ordinates from a C alpha trace application to model building and detection of co-ordinate errors.

1 reference

9 October 2024

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Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions

2 references

9 October 2024

https://opencitations.net/index/api/v1/references/10.1002/(SICI)1097-0134(19990101)34:1%3C82::AID-PROT7%3E3.0.CO;2-A

9 October 2024

https://opencitations.net/index/api/v1/citations/10.1006/JMBI.1997.0959

Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches

1 reference

9 October 2024

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Using a hydrophobic contact potential to evaluate native and near-native folds generated by molecular dynamics simulations

1 reference

9 October 2024

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Factors affecting the ability of energy functions to discriminate correct from incorrect folds

1 reference

9 October 2024

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Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

1 reference

9 October 2024

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Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme.

1 reference

9 October 2024

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LINUS: a hierarchic procedure to predict the fold of a protein.

1 reference

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Non-randomness in side-chain packing: the distribution of interplanar angles

1 reference

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Four helix bundle diversity in globular proteins

1 reference

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A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

1 reference

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Principles of helix-helix packing in proteins: the helical lattice superposition model.

1 reference

9 October 2024

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Computer modeling of protein folding: conformational and energetic analysis of reduced and detailed protein models

1 reference

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Helix packing angle preferences

1 reference

9 October 2024

https://opencitations.net/index/api/v1/references/10.1002/(SICI)1097-0134(19990101)34:1%3C82::AID-PROT7%3E3.0.CO;2-A

Identifiers

10.1002/(SICI)1097-0134(19990101)34:1<82::AID-PROT7>3.0.CO;2-A

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10336385%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10336385%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

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