(Q51786184)

12 April 2018

title

Complex network spectral moments for ATCUN motif DNA cleavage: first predictive study on proteins of human pathogen parasites (English)

1 reference

12 April 2018

1 reference

1 reference

12 April 2018

Julian Dorado

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12 April 2018

Francisco J Prado-Prado

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12 April 2018

Angeles Sánchez-González

object named as

Angeles Sánchez-González

0 references

Alejandro Pazos Sierra

object named as

Alejandro Pazos Sierra

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Humberto González-Díaz

object named as

Humberto González-Díaz

1 reference

12 April 2018

author name string

José M Vázquez

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12 April 2018

publication date

1 November 2009

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12 April 2018

Journal of Proteome Research

number of pages

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based on heuristic

inferred from page(s)

published in

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12 April 2018

volume

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12 April 2018

issue

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12 April 2018

page(s)

5219-5228

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12 April 2018

Natural/random protein classification models based on star network topological indices.

cites work

2 references

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Enzymes/non-enzymes classification model complexity based on composition, sequence, 3D and topological indices.

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Apo and calcium-bound crystal structures of cytoskeletal protein alpha-14 giardin (annexin E1) from the intestinal protozoan parasite Giardia lamblia

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12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Network scaling invariants help to elucidate basic topological principles of proteins

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12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Characterization of the copper(II)- and nickel(II)-transport site of human serum albumin. Studies of copper(II) and nickel(II) binding to peptide 1-24 of human serum albumin by 13C and 1H NMR spectroscopy

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Predicting multiple drugs side effects with a general drug-target interaction thermodynamic Markov model.

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12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

On a four-dimensional representation of DNA primary sequences

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12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

New 3D graphical representation of DNA sequence based on dual nucleotides

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12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Atom, atom-type, and total nonstochastic and stochastic quadratic fingerprints: a promising approach for modeling of antibacterial activity

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12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

A graphic approach to analyzing codon usage in 1562 Escherichia coli protein coding sequences

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12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Condensed representation of DNA primary sequences

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12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Biopolymer stochastic moments. I. Modeling human rhinovirus cellular recognition with protein surface electrostatic moments

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Methods for reliability and uncertainty assessment and for applicability evaluations of classification- and regression-based QSARs

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12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Proteins Markovian 3D-QSAR with spherically-truncated average electrostatic potentials

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Thrombin: a paradigm for enzymes allosterically activated by monovalent cations

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Targeted cleavage of HIV rev response element RNA by metallopeptide complexes

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Mixtures of tight-binding enzyme inhibitors. Kinetic analysis by a recursive rate equation

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

ATCUN-like metal-binding motifs in proteins: identification and characterization by crystal structure and sequence analysis

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Essentiality is an emergent property of metabolic network wiring

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Kinetic studies with the non-nucleoside HIV-1 reverse transcriptase inhibitor U-88204E

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Recognition of stable protein mutants with 3D stochastic average electrostatic potentials.

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Simple numerical descriptor for quantifying effect of toxic substances on DNA sequences

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Metabolic pathways variability and sequence/networks comparisons

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

The benzylthio-pyrimidine U-31,355, a potent inhibitor of HIV-1 reverse transcriptase

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Unified Markov thermodynamics based on stochastic forms to classify drugs considering molecular structure, partition system, and biological species: distribution of the antimicrobial G1 on rat tissues

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Structural and Biological Analysis of the Metal Sites ofEscherichia coliHydrogenase Accessory Protein HypB†

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Reliability and uncertainty in the estimation of pKa by least squares nonlinear regression analysis of multiwavelength spectrophotometric pH titration data.

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Markovian Backbone Negentropies: Molecular descriptors for protein research. I. Predicting protein stability in Arc repressor mutants

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Graphical approach to analyzing DNA sequences.

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Evidence for the cation-pi interaction between Cu2+ and tryptophan

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Graphical rules for enzyme-catalysed rate laws

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Local overfitting control via leverages

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Structural basis for double-stranded RNA processing by Dicer

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Physicochemical feature-based classification of amino acid mutations.

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Characterization of DNA primary sequences based on the average distances between bases.

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Identification of centrarchid hepcidins and evidence that 17beta-estradiol disrupts constitutive expression of hepcidin-1 and inducible expression of hepcidin-2 in largemouth bass (Micropterus salmoides).

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Metal-Binding and Nuclease Activity of an Antimicrobial Peptide Analogue of the Salivary Histatin 5†

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

A high-affinity metal-binding peptide from Escherichia coli HypB.

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Diagrammatization of codon usage in 339 human immunodeficiency virus proteins and its biological implication

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Predicting stability of Arc repressor mutants with protein stochastic moments

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Structural Insights into Membrane Targeting by the Flagellar Calcium-binding Protein (FCaBP), a Myristoylated and Palmitoylated Calcium Sensor in Trypanosoma cruzi

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

The ATCUN Domain as a Probe of Intermolecular Interactions: Application to Calmodulin−Peptide Complexes

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Do "antisense proteins" exist?

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Novel 2D maps and coupling numbers for protein sequences. The first QSAR study of polygalacturonases; isolation and prediction of a novel sequence from Psidium guajava L.

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Unified QSAR approach to antimicrobials. Part 3: first multi-tasking QSAR model for input-coded prediction, structural back-projection, and complex networks clustering of antiprotozoal compounds.

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Charge and hydrophobicity patterning along the sequence predicts the folding mechanism and aggregation of proteins: a computational approach.

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

ANN-QSAR model for selection of anticancer leads from structurally heterogeneous series of compounds.

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Graphical rules for non-steady state enzyme kinetic

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Inactivation of human angiotensin converting enzyme by copper peptide complexes containing ATCUN motifs

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

TOPS-MODE versus DRAGON descriptors to predict permeability coefficients through low-density polyethylene

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Apo and Calcium-bound Crystal Structures of Alpha-11 Giardin, an Unusual Annexin from Giardia lamblia

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Influence of stereochemistry and redox potentials on the single- and double-strand DNA cleavage efficiency of Cu(II) and Ni(II) Lys-Gly-His-derived ATCUN metallopeptides

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Kinetics of processive nucleic acid polymerases and nucleases

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Indeterminacy of reverse engineering of Gene Regulatory Networks: the curse of gene elasticity

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Non-stochastic and stochastic linear indices of the 'molecular pseudograph's atom adjacency matrix': application to 'in silico' studies for the rational discovery of new antimalarial compounds

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Valence screening of water in protein crystals reveals potential Na+ binding sites.

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Implications from a network-based topological analysis of ubiquitin unfolding simulations

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

LOC3D: annotate sub-cellular localization for protein structures

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Markov entropy backbone electrostatic descriptors for predicting proteins biological activity

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Predicting enzyme class from protein structure without alignments.

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Basic local alignment search tool

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Using cellular automata images and pseudo amino acid composition to predict protein subcellular location

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Linear free energy relationship for 4-substituted (o-phenylenediamine)platinum(II) dichloride derivatives using quantum mechanical descriptors

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Distribution moments of 2D-graphs as descriptors of DNA sequences

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

On the origin of the electrostatic barrier for proton transport in aquaporin

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Graphical representation and numerical characterization of H5N1 avian flu neuraminidase gene sequence.

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Proteins as networks: usefulness of graph theory in protein science

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Applications of graph theory to enzyme kinetics and protein folding kinetics. Steady and non-steady-state systems

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Neuromedin C binds Cu(II) and Ni(II) via the ATCUN motif: implications for the CNS and cancer growth

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

On 3-D graphical representation of DNA primary sequences and their numerical characterization

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

DNA cleavage study using copper (II)-GlyAibHis: a tripeptide complex based on ATCUN peptide motifs

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

3D-QSAR study for DNA cleavage proteins with a potential anti-tumor ATCUN-like motif

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

NMR structure of neuromedin C, a neurotransmitter with an amino terminal CuII-, NiII-binding (ATCUN) motif

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Steady-state kinetic studies with the polysulfonate U-9843, an HIV reverse transcriptase inhibitor

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Conformational and structural analysis of the equilibrium between single- and double-strand beta-helix of a D,L-alternating oligonorleucine

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

On the truncation of long-range electrostatic interactions in DNA.

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Pleomorphic copper coordination by Alzheimer's disease amyloid-beta peptide

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

The Protein Data Bank

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Stochastic entropy QSAR for the in silico discovery of anticancer compounds: prediction, synthesis, and in vitro assay of new purine carbanucleosides

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Digital coding of amino acids based on hydrophobic index

1 reference

12 August 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/PR900556G

Anti-angiogenesis effects of meisoindigo on chronic myelogenous leukemia in vitro

1 reference

7 August 2024

https://opencitations.net/index/api/v1/references/10.1021/PR900556G

Identifiers

DOI

10.1021/PR900556G

1 reference

12 April 2018

1 reference

12 April 2018