(Q50530506)

14 March 2018

title

Nuclear proteins: finding and binding target sites in chromatin (English)

1 reference

14 March 2018

main subject

binding site

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21181254

20 November 2024

Martin E. van Royen

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21181254

20 November 2024

Angelika Zotter

1 reference

14 March 2018

Bart Geverts

series ordinal

1 reference

14 March 2018

Shehu M. Ibrahim

series ordinal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21181254

20 November 2024

Adriaan B. Houtsmuller

series ordinal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21181254

20 November 2024

language of work or name

English

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21181254

20 November 2024

publication date

1 January 2011

1 reference

14 March 2018

January 2011

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21181254

full work available at URL

20 November 2024

https://link.springer.com/content/pdf/10.1007/s10577-010-9172-5.pdf

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21181254

http://link.springer.com/content/pdf/10.1007/s10577-010-9172-5.pdf

20 November 2024

file format

Portable Document Format

1 reference

https://api.crossref.org/works/10.1007/S10577-010-9172-5

http://link.springer.com/article/10.1007/s10577-010-9172-5/fulltext.html

20 November 2024

1 reference

https://api.crossref.org/works/10.1007/S10577-010-9172-5

http://link.springer.com/content/pdf/10.1007/s10577-010-9172-5

20 November 2024

1 reference

https://api.crossref.org/works/10.1007/S10577-010-9172-5

20 November 2024

1 reference

14 March 2018

volume

1 reference

14 March 2018

issue

1 reference

14 March 2018

page(s)

83-98

1 reference

14 March 2018

GR and HMGB1 interact only within chromatin and influence each other's residence time

cites work

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Molecular crowding affects diffusion and binding of nuclear proteins in heterochromatin and reveals the fractal organization of chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Dissecting the contribution of diffusion and interactions to the mobility of nuclear proteins

21 January 2018

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https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Dynamic assembly and sustained retention of 53BP1 at the sites of DNA damage are controlled by Mdc1/NFBD1

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Nonspecifically bound proteins spin while diffusing along DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Three-dimensional fluorescence recovery after photobleaching with the confocal scanning laser microscope

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Line FRAP with the confocal laser scanning microscope for diffusion measurements in small regions of 3-D samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Intracellular macromolecular mobility measured by fluorescence recovery after photobleaching with confocal laser scanning microscopes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Using FRAP and mathematical modeling to determine the in vivo kinetics of nuclear proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Dynamics of human DNA topoisomerases IIalpha and IIbeta in living cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

On the spontaneous stochastic dynamics of a single gene: complexity of the molecular interplay at the promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

In vivo dynamics of RNA polymerase II transcription.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Chromatin interaction of TATA-binding protein is dynamically regulated in human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Assembly of multiprotein complexes that control genome function

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

A kinetic framework for a mammalian RNA polymerase in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Molecular chaperones function as steroid receptor nuclear mobility factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Probing transcription factor dynamics at the single-molecule level in a living cell

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Nuclear dynamics of RAD52 group homologous recombination proteins in response to DNA damage.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Nuclear dynamics of PCNA in DNA replication and repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

DNA damage repair: anytime, anywhere?

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

The androgen receptor ligand-binding domain stabilizes DNA binding in living cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Antiandrogens prevent stable DNA-binding of the androgen receptor

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Physical constraints and functional characteristics of transcription factor-DNA interaction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Diffusion-limited compartmentalization of mammalian cell nuclei assessed by microinjected macromolecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Histone acetylation increases chromatin accessibility

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Visualizing one-dimensional diffusion of proteins along DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Dynamic basis for one-dimensional DNA scanning by the mismatch repair complex Msh2-Msh6.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Long-distance lateral diffusion of human Rad51 on double-stranded DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

How do site-specific DNA-binding proteins find their targets?

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Expanding the scope of quantitative FRAP analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Single-molecule imaging of RNA polymerase-DNA interactions in real time

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Androgen receptor (AR) coregulators: a diversity of functions converging on and regulating the AR transcriptional complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Nuclear receptor coregulators: multiple modes of modification

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Rapid switching of TFIIH between RNA polymerase I and II transcription and DNA repair in vivo.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Versatile DNA damage detection by the global genome nucleotide excision repair protein XPC

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Action of DNA repair endonuclease ERCC1/XPF in living cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Involvement of outside DNA sequences in the major kinetic path by which EcoRI endonuclease locates and leaves its recognition sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

ATM- and cell cycle-dependent regulation of ATR in response to DNA double-strand breaks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Kinetic characterization of linear diffusion of the restriction endonuclease EcoRV on DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Pausing of the restriction endonuclease EcoRI during linear diffusion on DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Visualization of single molecules of RNA polymerase sliding along DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Obstacle bypass in protein motion along DNA by two-dimensional rather than one-dimensional sliding

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

A closed-form analytic expression for FRAP formula for the binding diffusion model

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

A generalization of theory for two-dimensional fluorescence recovery after photobleaching applicable to confocal laser scanning microscopes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Concurrent fast and slow cycling of a transcriptional activator at an endogenous promoter.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Kinetics of core histones in living human cells: little exchange of H3 and H4 and some rapid exchange of H2B.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

The transcription cycle of RNA polymerase II in living cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Ligand-specific dynamics of the androgen receptor at its response element in living cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Reduced mobility of the alternate splicing factor (ASF) through the nucleoplasm and steady state speckle compartments

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Does the specific recongnition of DNA by the restriction endonucleaseEcoRI involve a linear diffusion step? Investigation of the processivity of theEcoRI endonuclease

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Dynamics of DNA replication factories in living cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Facilitated diffusion with DNA coiling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Distinct spatiotemporal dynamics of mammalian checkpoint regulators induced by DNA damage

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Mdc1 couples DNA double-strand break recognition by Nbs1 with its H2AX-dependent chromatin retention

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Quantifying effects of ligands on androgen receptor nuclear translocation, intranuclear dynamics, and solubility.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Dynamics of protein binding to telomeres in living cells: implications for telomere structure and function

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Role of three-dimensional bleach distribution in confocal and two-photon fluorescence recovery after photobleaching experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

A new FRAP/FRAPa method for three-dimensional diffusion measurements based on multiphoton excitation microscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Nuclear receptor coactivators: multiple enzymes, multiple complexes, multiple functions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Fractal geometry in the nucleus

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

The glucocorticoid receptor: rapid exchange with regulatory sites in living cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

The ligand binding domain controls glucocorticoid receptor dynamics independent of ligand release.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

In vivo dynamics of chromatin-associated complex formation in mammalian nucleotide excision repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Evidence for a common mode of transcription factor interaction with chromatin as revealed by improved quantitative fluorescence recovery after photobleaching.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

FRAP and kinetic modeling in the analysis of nuclear protein dynamics: what do we really know?

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

UV-DDB-dependent regulation of nucleotide excision repair kinetics in living cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

High mobility of proteins in the mammalian cell nucleus

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Global nature of dynamic protein-chromatin interactions in vivo: three-dimensional genome scanning and dynamic interaction networks of chromatin proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Xeroderma pigmentosum group A protein loads as a separate factor onto DNA lesions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Ligand-specific dynamics of the progesterone receptor in living cells and during chromatin remodeling in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

RNA polymerase can track a DNA groove during promoter search

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Molecular determinants of glucocorticoid receptor mobility in living cells: the importance of ligand affinity

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

The one-dimensional diffusion coefficient of proteins absorbed on DNA. Hydrodynamic considerations

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Coregulator function: a key to understanding tissue specificity of selective receptor modulators

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

High mobility of flap endonuclease 1 and DNA polymerase eta associated with replication foci in mammalian S-phase nucleus

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

DNA polymerase clamp shows little turnover at established replication sites but sequential de novo assembly at adjacent origin clusters

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

FRAP analysis of binding: proper and fitting

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Analysis of binding reactions by fluorescence recovery after photobleaching

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

One- and three-dimensional pathways for proteins to reach specific DNA sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Dissecting the binding mechanism of the linker histone in live cells: an integrated FRAP analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Rapid glucocorticoid receptor exchange at a promoter is coupled to transcription and regulated by chaperones and proteasomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

FRAP reveals that mobility of oestrogen receptor-alpha is ligand- and proteasome-dependent

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

The human RAD54 recombinational DNA repair protein is a double-stranded DNA-dependent ATPase

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Quantitative interpretation of binding reactions of rapidly diffusing species using fluorescence recovery after photobleaching.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Investigation of binding mechanisms of nuclear proteins using confocal scanning laser microscopy and FRAP.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

How DNA coiling enhances target localization by proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Compartmentalization of androgen receptor protein-protein interactions in living cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Fluorescence recovery after photobleaching (FRAP) to study nuclear protein dynamics in living cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Condensed chromatin domains in the mammalian nucleus are accessible to large macromolecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Anomalous diffusion of fluorescent probes inside living cell nuclei investigated by spatially-resolved fluorescence correlation spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Cdt1 associates dynamically with chromatin throughout G1 and recruits Geminin onto chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

Recruitment of the nucleotide excision repair endonuclease XPG to sites of UV-induced dna damage depends on functional TFIIH.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-010-9172-5

A 629RKLKK633 motif in the hinge region controls the androgen receptor at multiple levels

21 January 2018

1 reference

12 December 2020

Single molecule measurements of repressor protein 1D diffusion on DNA

1 reference

12 December 2020

The kinetic mechanism of EcoRI endonuclease

1 reference

12 December 2020

Mechanism of specific site location and DNA cleavage by EcoR I endonuclease

1 reference

12 December 2020

Stable DNA loops in vivo and in vitro: roles in gene regulation at a distance and in biophysical characterization of DNA.

1 reference

12 December 2020

One-dimensional diffusion of proteins along DNA. Its biological and chemical significance revealed by single-molecule measurements

1 reference

12 December 2020

Dissecting chromatin interactions in living cells from protein mobility maps.

1 reference

12 December 2020

A perspective of the dynamic structure of the nucleus explored at the single-molecule level

1 reference

12 December 2020

Linear diffusion of the restriction endonuclease EcoRV on DNA is essential for the in vivo function of the enzyme

1 reference

12 December 2020

Gene amplification and analysis

103

BJ Terry

1987

1 reference

https://api.crossref.org/works/10.1007/S10577-010-9172-5

20 November 2024

Identifiers

1 reference

14 March 2018

1 reference

14 March 2018