(Q49220038)

19 February 2018

title

Tuning RNA folding and function through rational design of junction topology (English)

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19 February 2018

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19 February 2018

author name string

May Daher

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19 February 2018

Anthony M Mustoe

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19 February 2018

Alex Morriss-Andrews

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19 February 2018

Charles L Brooks

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19 February 2018

language of work or name

English

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publication date

1 September 2017

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19 February 2018

published in

Nucleic Acids Research

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19 February 2018

volume

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19 February 2018

issue

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19 February 2018

page(s)

9706-9715

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19 February 2018

Creative Commons Attribution-NonCommercial 4.0 International

start time

17 July 2017

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April 2022 Public Data File from Crossref

copyrighted

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describes a project that uses

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC5766210/fullTextXML

inferred from PubMed Central ID database lookup

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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A nomenclature of junctions and branchpoints in nucleic acids

22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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A four-way junction accelerates hairpin ribozyme folding via a discrete intermediate

22 May 2018

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22 May 2018

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Correlating structural dynamics and function in single ribozyme molecules

22 May 2018

1 reference

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Structural dynamics of catalytic RNA highlighted by fluorescence resonance energy transfer.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5766210

The folding of the hairpin ribozyme: dependence on the loops and the junction

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5766210

The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5766210

Structural basis for heterogeneous kinetics: reengineering the hairpin ribozyme

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5766210

Hierarchy and dynamics of RNA folding

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5766210

Essential nucleotide sequences and secondary structure elements of the hairpin ribozyme

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5766210

Catalytically active geometry in the reversible circularization of ‘mini-monomer’ RNAs derived from the complementary strand of tobacco ringspot virus satellite RNA

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5766210

Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding

22 May 2018

1 reference

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Mutually Exclusive Formation of G-Quadruplex and i-Motif Is a General Phenomenon Governed by Steric Hindrance in Duplex DNA.

22 May 2018

1 reference

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Topology links RNA secondary structure with global conformation, dynamics, and adaptation

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5766210

Topology of three-way junctions in folded RNAs

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5766210

The linkage between magnesium binding and RNA folding.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5766210

Probing non-selective cation binding in the hairpin ribozyme with Tb(III).

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5766210

Stability of hairpin ribozyme tertiary structure is governed by the interdomain junction

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5766210

Construction of hairpin ribozymes with a three-way junction

14 August 2018

1 reference

12 December 2020

The hairpin ribozyme: structure, assembly and catalysis

1 reference

12 December 2020

A unique mechanism for RNA catalysis: the role of metal cofactors in hairpin ribozyme cleavage

1 reference

12 December 2020

An unusual pH-independent and metal-ion-independent mechanism for hairpin ribozyme catalysis

1 reference

12 December 2020

Structure-mapping of the hairpin ribozyme. Magnesium-dependent folding and evidence for tertiary interactions within the ribozyme-substrate complex

1 reference

12 December 2020

RNA self-assembly and RNA nanotechnology

1 reference

12 December 2020

Helical junctions as determinants for RNA folding: origin of tertiary structure stability of the hairpin ribozyme

1 reference

12 December 2020

Bulge-induced bends in RNA: quantification by transient electric birefringence

1 reference

12 December 2020

The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKX614

1 reference

19 February 2018

PMC publication ID

5766210

1 reference

19 February 2018

PubMed publication ID

28934478

1 reference

19 February 2018