(Q47781002)

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Evidence for diversifying selection in a set of Mycobacterium tuberculosis genes in response to antibiotic- and nonantibiotic-related pressure.

scientific article published on 28 February 2013

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24 February 2020

Evidence for diversifying selection in a set of Mycobacterium tuberculosis genes in response to antibiotic- and nonantibiotic-related pressure (English)

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24 February 2020

Mycobacterium tuberculosis

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Fernando Rodrigues

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24 February 2020

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24 February 2020

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24 February 2020

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24 February 2020

Sébastien Gagneux

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24 February 2020

Margarida Saraiva

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24 February 2020

Marta Pinto-Carbó

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Marta Pinto-Carbó

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24 February 2020

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António G Castro

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24 February 2020

Douglas Young

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24 February 2020

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28 February 2013

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24 February 2020

Molecular Biology and Evolution

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24 February 2020

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24 February 2020

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24 February 2020

1326-1336

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24 February 2020

Evolution, population structure, and phylogeography of genetically monomorphic bacterial pathogens

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST038

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Accuracy and power of bayes prediction of amino acid sites under positive selection

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST038

21 January 2018

Significance of the identification in the Horn of Africa of an exceptionally deep branching Mycobacterium tuberculosis clade

1 reference

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21 January 2018

Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved

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21 January 2018

Genotyping of genetically monomorphic bacteria: DNA sequencing in Mycobacterium tuberculosis highlights the limitations of current methodologies.

1 reference

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21 January 2018

Induction of Th1 and Th2 CD4+ T cell responses: the alternative approaches

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21 January 2018

Does M. tuberculosis genomic diversity explain disease diversity?

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Parallel evolution of drug resistance in HIV: failure of nonsynonymous/synonymous substitution rate ratio to detect selection

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Arms races between and within species

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Progression to active tuberculosis, but not transmission, varies by Mycobacterium tuberculosis lineage in The Gambia

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The outcome of acute hepatitis C predicted by the evolution of the viral quasispecies

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Mycobacterial lineages causing pulmonary and extrapulmonary tuberculosis, Ethiopia.

1 reference

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21 January 2018

Variable host-pathogen compatibility in Mycobacterium tuberculosis

1 reference

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21 January 2018

Global phylogeography of Mycobacterium tuberculosis and implications for tuberculosis product development.

1 reference

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21 January 2018

Mycobacterium bovis infection in human beings.

1 reference

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21 January 2018

Comprehensive proteomic profiling of the membrane constituents of a Mycobacterium tuberculosis strain

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST038

21 January 2018

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

1 reference

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21 January 2018

Missense mutations in the catalase-peroxidase gene, katG, are associated with isoniazid resistance in Mycobacterium tuberculosis

1 reference

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21 January 2018

Horizontally acquired genomic islands in the tubercle bacilli

1 reference

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21 January 2018

Genome variation and evolution of the malaria parasite Plasmodium falciparum

1 reference

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Adaptation of HIV-1 to human leukocyte antigen class I

1 reference

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21 January 2018

A semi-empirical method for prediction of antigenic determinants on protein antigens

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST038

21 January 2018

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST038

21 January 2018

Naturally occurring horizontal gene transfer and homologous recombination in Mycobacterium

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST038

21 January 2018

Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST038

21 January 2018

A simple method for displaying the hydropathic character of a protein

1 reference

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21 January 2018

Association of Mycobacterium tuberculosis complex isolates of BOVIS and Central Asian (CAS) genotypic lineages with extrapulmonary disease

1 reference

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21 January 2018

Understanding latent tuberculosis: a moving target

1 reference

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21 January 2018

PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization

1 reference

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21 January 2018

SIFT: Predicting amino acid changes that affect protein function

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST038

21 January 2018

Genes under positive selection in Escherichia coli.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST038

21 January 2018

Human macrophage responses to clinical isolates from the Mycobacterium tuberculosis complex discriminate between ancient and modern lineages

1 reference

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21 January 2018

Variation in gamma interferon responses to different infecting strains of Mycobacterium tuberculosis in acid-fast bacillus smear-positive patients and household contacts in Antananarivo, Madagascar

1 reference

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21 January 2018

Molecular genetic analysis of nucleotide polymorphisms associated with ethambutol resistance in human isolates of Mycobacterium tuberculosis

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21 January 2018

Genome-wide requirements for Mycobacterium tuberculosis adaptation and survival in macrophages

1 reference

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21 January 2018

Tuberculosis drug resistance mutation database

1 reference

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21 January 2018

Genes required for mycobacterial growth defined by high density mutagenesis

1 reference

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SNPsFinder--a web-based application for genome-wide discovery of single nucleotide polymorphisms in microbial genomes.

1 reference

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The Staden sequence analysis package

1 reference

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21 January 2018

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

1 reference

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Biological and biomedical implications of the co-evolution of pathogens and their hosts

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PAML 4: phylogenetic analysis by maximum likelihood

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Statistical methods for detecting molecular adaptation

1 reference

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21 January 2018

Bayes empirical bayes inference of amino acid sites under positive selection

1 reference

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InterProScan--an integration platform for the signature-recognition methods in InterPro

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A greedy algorithm for aligning DNA sequences

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Identifiers

10.1093/MOLBEV/MST038

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23449927%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

PubMed publication ID

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23449927%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

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