(Q46632156)

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Alternative splicing of type II procollagen exon 2 is regulated by the combination of a weak 5' splice site and an adjacent intronic stem-loop cis element

scientific article published on 2 August 2005

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/16076844

Alternative splicing of type II procollagen exon 2 is regulated by the combination of a weak 5' splice site and an adjacent intronic stem-loop cis element (English)

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/16076844

alternative mRNA splicing, via spliceosome

1 reference

based on heuristic

inferred from title

Linda J Sandell

5

object named as

Linda J Sandell

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/16076844

author name string

Audrey McAlinden

1

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/16076844

Necat Havlioglu

2

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/16076844

Li Liang

3

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/16076844

Sherri R Davies

4

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/16076844

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publication date

2 August 2005

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Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/16076844

Journal of Biological Chemistry

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Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/16076844

280

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/16076844

38

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/16076844

32700-32711

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/16076844

Mechanisms of alternative pre-messenger RNA splicing

1 reference

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The expression of two isoforms of the human fibroblast growth factor receptor (flg) is directed by alternative splicing

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Regulation of alternative pre-mRNA splicing during erythroid differentiation.

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21 January 2018

Tissue-specific splicing of two mutually exclusive exons of the chicken beta-tropomyosin pre-mRNA: positive and negative regulations

1 reference

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21 January 2018

Mechanical devices of the spliceosome: motors, clocks, springs, and things

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Co-transcriptional splicing of pre-messenger RNAs: considerations for the mechanism of alternative splicing

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Common themes in the function of transcription and splicing enhancers

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Multiple distinct splicing enhancers in the protein-coding sequences of a constitutively spliced pre-mRNA.

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21 January 2018

Exonic splicing enhancers: mechanism of action, diversity and role in human genetic diseases

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Predictive identification of exonic splicing enhancers in human genes

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Alternative pre-mRNA splicing: the logic of combinatorial control

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The SR protein family: pleiotropic functions in pre-mRNA splicing

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Sorting out the complexity of SR protein functions

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The RNA-binding protein TIA-1 is a novel mammalian splicing regulator acting through intron sequences adjacent to a 5' splice site

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An intronic splicing silencer causes skipping of the IIIb exon of fibroblast growth factor receptor 2 through involvement of polypyrimidine tract binding protein

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The hnRNP A1 protein regulates HIV-1 tat splicing via a novel intron silencer element.

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RNA secondary structure: an important cis-element in rat calcitonin/CGRP pre-messenger RNA splicing

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Regulation of fibronectin EDA exon alternative splicing: possible role of RNA secondary structure for enhancer display.

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Regulation of protein diversity by alternative pre-mRNA splicing with specific focus on chondrogenesis.

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21 January 2018

Cis-acting elements regulate alternative splicing of exons 6A, 6B and 8 of the alpha1(XI) collagen gene and contribute to the regional diversification of collagen XI matrices.

1 reference

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21 January 2018

Conservation of the sizes of 53 introns and over 100 intronic sequences for the binding of common transcription factors in the human and mouse genes for type II procollagen (COL2A1).

1 reference

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21 January 2018

Tissue-specific and differential expression of alternatively spliced alpha 1(II) collagen mRNAs in early human embryos.

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21 January 2018

Preferential expression of alternatively spliced mRNAs encoding type II procollagen with a cysteine-rich amino-propeptide in differentiating cartilage and nonchondrogenic tissues during early mouse development

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M505940200

21 January 2018

Type IIA Procollagen Amino Propeptide Is Localized in Human Embryonic Tissues

1 reference

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21 January 2018

Type IIA procollagen containing the cysteine-rich amino propeptide is deposited in the extracellular matrix of prechondrogenic tissue and binds to TGF-beta1 and BMP-2.

1 reference

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21 January 2018

Ultrastructural characterization of developmental and degenerative vitreo-retinal changes in the eyes of transgenic mice with a deletion mutation in type II collagen gene.

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21 January 2018

Development of a cellular model to study alternative splicing of type II collagen gene

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M505940200

21 January 2018

Cis-acting intronic elements that regulate cartilage-specific alternative splicing of the type II collagen (Col2) pre-mRNA lie at or near splice site junction sequences flanking exon 2 of the gene

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M505940200

21 January 2018

Incomplete Processing of Type II Procollagen by a Rat Chondrosarcoma Cell Line

1 reference

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21 January 2018

Human-mouse alignments with BLASTZ

1 reference

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21 January 2018

Combining phylogenetic and hidden Markov models in biosequence analysis

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21 January 2018

Aligning multiple genomic sequences with the threaded blockset aligner

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21 January 2018

Mfold web server for nucleic acid folding and hybridization prediction

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Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

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21 January 2018

Chondrogenic differentiation of murine C3H10T1/2 multipotential mesenchymal cells: I. Stimulation by bone morphogenetic protein-2 in high-density micromass cultures

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21 January 2018

Role of myosin phosphatase isoforms in cGMP-mediated smooth muscle relaxation

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21 January 2018

Intronic sequence with both negative and positive effects on the regulation of alternative transcripts of the chicken beta tropomyosin transcripts.

1 reference

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21 January 2018

Identification of eight proteins that cross-link to pre-mRNA in the yeast commitment complex

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Interaction of the U1 snRNP with nonconserved intronic sequences affects 5' splice site selection.

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Splicing of a myosin phosphatase targeting subunit 1 alternative exon is regulated by intronic cis-elements and a novel bipartite exonic enhancer/silencer element

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21 January 2018

TIA proteins are necessary but not sufficient for the tissue-specific splicing of the myosin phosphatase targeting subunit 1

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21 January 2018

The splicing regulator TIA-1 interacts with U1-C to promote U1 snRNP recruitment to 5' splice sites

1 reference

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21 January 2018

A novel bipartite splicing enhancer modulates the differential processing of the human fibronectin EDA exon

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Alternative splicing caused by RNA secondary structure.

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21 January 2018

Pre-mRNA secondary structure and the regulation of splicing

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21 January 2018

RNA secondary structure repression of a muscle-specific exon in HeLa cell nuclear extracts.

1 reference

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21 January 2018

Exon as well as intron sequences are cis-regulating elements for the mutually exclusive alternative splicing of the beta tropomyosin gene

1 reference

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21 January 2018

5' splice site mutations in tau associated with the inherited dementia FTDP-17 affect a stem-loop structure that regulates alternative splicing of exon 10.

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21 January 2018

Helicase mechanisms and the coupling of helicases within macromolecular machines. Part II: Integration of helicases into cellular processes

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The 100-kda U5 snRNP protein (hPrp28p) contacts the 5' splice site through its ATPase site

1 reference

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21 January 2018

p68 RNA helicase is an essential human splicing factor that acts at the U1 snRNA-5' splice site duplex

1 reference

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21 January 2018

The SR splicing factors ASF/SF2 and SC35 have antagonistic effects on intronic enhancer-dependent splicing of the beta-tropomyosin alternative exon 6A

1 reference

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21 January 2018

hnRNP A1 and the SR proteins ASF/SF2 and SC35 have antagonistic functions in splicing of beta-tropomyosin exon 6B.

1 reference

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21 January 2018

Roles of hnRNP A1, SR proteins, and p68 helicase in c-H-ras alternative splicing regulation

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SC35 and heterogeneous nuclear ribonucleoprotein A/B proteins bind to a juxtaposed exonic splicing enhancer/exonic splicing silencer element to regulate HIV-1 tat exon 2 splicing

1 reference

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21 January 2018

Multiple links between transcription and splicing

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A direct role of SRY and SOX proteins in pre-mRNA splicing

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21 January 2018

Identifiers

10.1074/JBC.M505940200

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/16076844

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/16076844

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