(Q46168654)

20 December 2017

title

The role of plastic beta-hairpin and weak hydrophobic core in the stability and unfolding of a full sequence design protein (English)

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20 December 2017

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Hongxing Lei

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20 December 2017

Yong Duan

series ordinal

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20 December 2017

language of work or name

English

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publication date

1 December 2004

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20 December 2017

Journal of Chemical Physics

published in

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20 December 2017

volume

121

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20 December 2017

issue

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20 December 2017

page(s)

12104-12111

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20 December 2017

Intermediates in Protein Folding Reactions and the Mechanism of Protein Folding

cites work

1 reference

The mechanism of protein folding. Implications of in vitro refolding models for de novo protein folding and translocation in the cell

21 January 2018

1 reference

Optimization of rates of protein folding: the nucleation-condensation mechanism and its implications

21 January 2018

1 reference

Mechanism of protein folding

21 January 2018

1 reference

Sequence evolution and the mechanism of protein folding

21 January 2018

1 reference

Mechanism of fast protein folding

21 January 2018

1 reference

The present view of the mechanism of protein folding

21 January 2018

1 reference

Deadly conformations--protein misfolding in prion disease

21 January 2018

1 reference

Protein misfolding and disease: Principles and protocols. Methods in molecular biology, Vol. 232, edited by P. Bross and N. Gregersen.: 2003. Totowa, New Jersey, USA: Human Press, Inc. 318 pp. $99.50.

21 January 2018

1 reference

Changes in biomolecular conformation seen by small angle X-ray scattering

21 January 2018

1 reference

Direct observation of fast protein folding: the initial collapse of apomyoglobin

21 January 2018

1 reference

Fast kinetics and mechanisms in protein folding

21 January 2018

1 reference

Probing protein dynamics using temperature jump relaxation spectroscopy

21 January 2018

1 reference

The early stage of folding of villin headpiece subdomain observed in a 200-nanosecond fully solvated molecular dynamics simulation

21 January 2018

1 reference

Reversible peptide folding in solution by molecular dynamics simulation

21 January 2018

1 reference

On the simulation of protein folding by short time scale molecular dynamics and distributed computing

21 January 2018

1 reference

Distinguish protein decoys by using a scoring function based on a new AMBER force field, short molecular dynamics simulations, and the generalized born solvent model

21 January 2018

1 reference

Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution

21 January 2018

1 reference

Protein Unfolding Pathways Explored Through Molecular Dynamics Simulations

21 January 2018

1 reference

Protein folding and unfolding at atomic resolution

21 January 2018

1 reference

Molecular dynamics simulation of the unfolding of barnase: characterization of the major intermediate 1 1Edited by A. R. Fersht

21 January 2018

1 reference

Identification and characterization of the unfolding transition state of chymotrypsin inhibitor 2 by molecular dynamics simulations

21 January 2018

1 reference

Direct comparison of experimental and calculated folding free energies for hydrophobic deletion mutants of chymotrypsin inhibitor 2: free energy perturbation calculations using transition and denatured states from molecular dynamics simulations of u

21 January 2018

1 reference

From folding theories to folding proteins: a review and assessment of simulation studies of protein folding and unfolding

21 January 2018

1 reference

Thermal unfolding simulations of apo-calmodulin using leap-dynamics.

21 January 2018

1 reference

Thermal unfolding molecular dynamics simulation of Escherichia coli dihydrofolate reductase: thermal stability of protein domains and unfolding pathway

21 January 2018

1 reference

Molecular simulation of the reversible mechanical unfolding of proteins

21 January 2018

1 reference

21 January 2018

1 reference

De Novo Protein Design: Fully Automated Sequence Selection

21 January 2018

1 reference

Study of the stability and unfolding mechanism of BBA1 by molecular dynamics simulations at different temperatures.

21 January 2018

1 reference

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

21 January 2018

1 reference

A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations

21 January 2018

1 reference

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 January 2018

1 reference

Unspecific hydrophobic stabilization of folding transition states

21 January 2018

1 reference

Protein folding funnels: the nature of the transition state ensemble

21 January 2018

1 reference

Probing the folding free energy landscape of the Src-SH3 protein domain

21 January 2018

1 reference

Trp-cage: Folding free energy landscape in explicit water

21 January 2018

1 reference

The beta-beta-alpha fold: explorations in sequence space

21 January 2018

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Dissecting the stability of a beta-hairpin peptide that folds in water: NMR and molecular dynamics analysis of the beta-turn and beta-strand contributions to folding

21 January 2018

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Comparison of a QM/MM force field and molecular mechanics force fields in simulations of alanine and glycine "dipeptides" (Ace-Ala-Nme and Ace-Gly-Nme) in water in relation to the problem of modeling the unfolded peptide backbone in solution

21 January 2018

1 reference

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

21 January 2018

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Interplay of secondary structures and side-chain contacts in the denatured state of BBA1

21 January 2018

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21 January 2018

Identifiers

DOI

10.1063/1.1822916

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20 December 2017

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20 December 2017