(Q41517490)

2 October 2017

Genome-wide analysis reveals distinct patterns of epigenetic features in long non-coding RNA loci (English)

1 reference

2 October 2017

0 references

1 reference

1 reference

2 October 2017

Satish Sati

1 reference

2 October 2017

Sourav Ghosh

series ordinal

1 reference

2 October 2017

Vaibhav Jain

series ordinal

1 reference

2 October 2017

Shantanu Sengupta

series ordinal

1 reference

2 October 2017

25 August 2012

1 reference

2 October 2017

Nucleic Acids Research

1 reference

2 October 2017

1 reference

2 October 2017

1 reference

2 October 2017

10018-10031

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

2 October 2017

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

cites work

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High resolution methylome map of rat indicates role of intragenic DNA methylation in identification of coding region

6 June 2018

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Long noncoding RNA: unveiling hidden layer of gene regulatory networks

6 June 2018

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The long noncoding RNA Six3OS acts in trans to regulate retinal development by modulating Six3 activity

6 June 2018

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Shaping the Genome with Non-Coding RNAs

6 June 2018

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Generation of bivalent chromatin domains during cell fate decisions

6 June 2018

1 reference

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CpG islands and the regulation of transcription

6 June 2018

1 reference

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Long noncoding RNAs and human disease

6 June 2018

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Relationship between gene body DNA methylation and intragenic H3K9me3 and H3K36me3 chromatin marks

6 June 2018

1 reference

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The functional role of long non-coding RNA in human carcinomas

6 June 2018

1 reference

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DNA methylation of the first exon is tightly linked to transcriptional silencing

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Silencing chromatin: comparing modes and mechanisms

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Non‐coding RNAs and their epigenetic regulatory mechanisms

6 June 2018

1 reference

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The UCSC Genome Browser database: update 2011

6 June 2018

1 reference

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The NIH Roadmap Epigenomics Mapping Consortium

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Orphan CpG islands identify numerous conserved promoters in the mammalian genome

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Architectural epigenetics: mitotic retention of mammalian transcriptional regulatory information

6 June 2018

1 reference

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Role of H3K27 methylation in the regulation of lncRNA expression

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Conserved role of intragenic DNA methylation in regulating alternative promoters

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Contrasting chromatin organization of CpG islands and exons in the human genome

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Epigenetics and gene expression

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Genome-wide evolutionary analysis of eukaryotic DNA methylation.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Dynamic changes in the human methylome during differentiation

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Cell culture-induced aberrant methylation of the imprinted IG DMR in human lymphoblastoid cell lines

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Non-coding RNAs: regulators of disease

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Fast and accurate short read alignment with Burrows-Wheeler transform

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Linking DNA methylation and histone modification: patterns and paradigms

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Genomic landscape of developing male germ cells

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

TopHat: discovering splice junctions with RNA-Seq

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Noncoding RNA in development

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Model-based analysis of ChIP-Seq (MACS)

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Non-coding RNAs, epigenetics and complexity

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Specific expression of long noncoding RNAs in the mouse brain

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

A chromatin landmark and transcription initiation at most promoters in human cells

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Noncoding RNAs and RNA editing in brain development, functional diversification, and neurological disease

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Identification and characterization of bovine regulator of telomere length elongation helicase gene (RTEL): molecular cloning, expression distribution, splice variants and DNA methylation profile

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Tsix-mediated epigenetic switch of a CTCF-flanked region of the Xist promoter determines the Xist transcription program

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

GENCODE: producing a reference annotation for ENCODE

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Elongation of the Kcnq1ot1 transcript is required for genomic imprinting of neighboring genes

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Noncoding RNAs of trithorax response elements recruit Drosophila Ash1 to Ultrabithorax

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Experimental approaches to identify non-coding RNAs

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

The non-coding Air RNA is required for silencing autosomal imprinted genes

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

The Ensembl genome database project

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Non-coding RNAs: the architects of eukaryotic complexity

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Tsix, a gene antisense to Xist at the X-inactivation centre

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

The product of the H19 gene may function as an RNA

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Identification of novel transcripts in annotated genomes using RNA-Seq

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

The relationship between non-protein-coding DNA and eukaryotic complexity.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

A differentially methylated region within the gene Kcnq1 functions as an imprinted promoter and silencer

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488231

Unregulated expression of the imprinted genes H19 and Igf2r in mouse uniparental fetuses

19 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22923516

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKS776

1 reference

2 October 2017

1 reference

2 October 2017

PubMed publication ID

22923516

1 reference