(Q40512092)

21 September 2017

Markov propagation of allosteric effects in biomolecular systems: application to GroEL-GroES. (English)

1 reference

21 September 2017

Ivet Bahar

0 references

author name string

Chakra Chennubhotla

series ordinal

1 reference

21 September 2017

4 July 2006

1 reference

Molecular Systems Biology

21 September 2017

1 reference

21 September 2017

1 reference

21 September 2017

1 reference

describes a project that uses

21 September 2017

Bayes' theorem

1 reference

18 June 2022

https://europepmc.org/article/PMC/1681507

inferred from PubMed Central ID database lookup

cites work

Structural changes involved in protein binding correlate with intrinsic motions of proteins in the unbound state

1 reference

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Elastic network models for understanding biomolecular machinery: from enzymes to supramolecular assemblies

22 September 2017

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Allosteric regulation of chaperonins.

22 September 2017

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Coarse-grained normal mode analysis in structural biology

22 September 2017

1 reference

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Coupling between catalytic site and collective dynamics: a requirement for mechanochemical activity of enzymes

22 September 2017

1 reference

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Allosteric mechanisms of signal transduction

22 September 2017

1 reference

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Geometric diffusions as a tool for harmonic analysis and structure definition of data: diffusion maps.

22 September 2017

1 reference

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Quantifying allosteric effects in proteins.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

A mutant chaperonin with rearranged inter-ring electrostatic contacts and temperature-sensitive dissociation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

A mobile loop order-disorder transition modulates the speed of chaperonin cycling

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

Conversion of the allosteric transition of GroEL from concerted to sequential by the single mutation Asp-155 -> Ala.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

Allosteric changes in protein structure computed by a simple mechanical model: hemoglobin T<-->R2 transition.

22 September 2017

1 reference

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ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

Evolutionarily conserved networks of residues mediate allosteric communication in proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

The chaperonin folding machine

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

Phi value analysis of heterogeneity in pathways of allosteric transitions: Evidence for parallel pathways of ATP-induced conformational changes in a GroEL ring

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

Mapping pathways of allosteric communication in GroEL by analysis of correlated mutations

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

Chaperonin-mediated protein folding

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

Anisotropy of fluctuation dynamics of proteins with an elastic network model

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

The importance of a mobile loop in regulating chaperonin/ co-chaperonin interaction: humans versus Escherichia coli

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

A dynamic model for the allosteric mechanism of GroEL

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

22 September 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

Evolutionarily conserved pathways of energetic connectivity in protein families

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

Genetic analysis of the bacteriophage T4-encoded cochaperonin Gp31

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

The allosteric mechanism of the chaperonin GroEL: a dynamic analysis

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

The crystal structure of the asymmetric GroEL-GroES-(ADP)7 chaperonin complex

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

Detection of changes in pairwise interactions during allosteric transitions: coupling between local and global conformational changes in GroEL

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

Residues in chaperonin GroEL required for polypeptide binding and release

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

The crystal structure of the bacterial chaperonin GroEL at 2.8 A

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

Role of the chaperonin cofactor Hsp10 in protein folding and sorting in yeast mitochondria

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

Comparison of Experimental Binding Data and Theoretical Models in Proteins Containing Subunits*

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

Annealing function of GroEL: structural and bioinformatic analysis.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

Molecular mechanisms of chaperonin GroEL-GroES function

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

Dynamics of proteins predicted by molecular dynamics simulations and analytical approaches: application to alpha-amylase inhibitor

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

Analysis of domain motions by approximate normal mode calculations

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

Inter-ring communication is disrupted in the GroEL mutant Arg13 --> Gly; Ala126 --> Val with known crystal structure.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

Characterization of a functionally important mobile domain of GroES.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

Nested cooperativity in the ATPase activity of the oligomeric chaperonin GroEL.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

Compensatory changes in GroEL/Gp31 affinity as a mechanism for allele-specific genetic interaction

20 August 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681507

4 November 2018

https://api.crossref.org/works/10.1038%2FMSB4100075

7 January 2021

The Disordered Mobile Loop of GroES Folds into a Defined β-Hairpin upon Binding GroEL

1 reference

12 December 2020

Structural basis of allosteric changes in the GroEL mutant Arg197-->Ala

1 reference

12 December 2020

Residue lysine-34 in GroES modulates allosteric transitions in GroEL

1 reference

12 December 2020

Conformational changes in the chaperonin GroEL: new insights into the allosteric mechanism

1 reference

12 December 2020

Structure and function in GroEL-mediated protein folding

1 reference

12 December 2020

Statistical Thermodynamics of Random Networks [and Discussion]

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FMSB4100075

7 January 2021

Gaussian Dynamics of Folded Proteins

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FMSB4100075

7 January 2021

https://api.crossref.org/works/10.1038%2FMSB4100075

1 reference

7 January 2021

Identifiers

DOI

10.1038/MSB4100075

1 reference

release_7iznfo5lhzewfmsf5kjvbqfln4

21 September 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/7iznfo5lhzewfmsf5kjvbqfln4

24 November 2022

mapped directly with Wikidata item

1 reference

21 September 2017

PubMed publication ID

16820777

1 reference