(Q40565888)

English

The effect of codon usage on the oligonucleotide composition of the E. coli genome and identification of over- and underrepresented sequences by Markov chain analysis.

scientific article published on March 1987

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3550700%20AND%20SRC:MED&resulttype=core&format=json

28 September 2019

The effect of codon usage on the oligonucleotide composition of the E. coli genome and identification of over- and underrepresented sequences by Markov chain analysis (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3550700%20AND%20SRC:MED&resulttype=core&format=json

28 September 2019

Escherichia coli

0 references

0 references

Jonathan Arnold

2

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3550700%20AND%20SRC:MED&resulttype=core&format=json

28 September 2019

author name string

G J Phillips

1

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3550700%20AND%20SRC:MED&resulttype=core&format=json

28 September 2019

R Ivarie

3

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3550700%20AND%20SRC:MED&resulttype=core&format=json

28 September 2019

publication date

1 March 1987

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3550700%20AND%20SRC:MED&resulttype=core&format=json

28 September 2019

number of pages

12

1 reference

based on heuristic

inferred from page(s)

Nucleic Acids Research

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3550700%20AND%20SRC:MED&resulttype=core&format=json

28 September 2019

15

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3550700%20AND%20SRC:MED&resulttype=core&format=json

28 September 2019

6

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3550700%20AND%20SRC:MED&resulttype=core&format=json

28 September 2019

2627-2638

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3550700%20AND%20SRC:MED&resulttype=core&format=json

28 September 2019

Codon catalog usage is a genome strategy modulated for gene expressivity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340673

22 September 2017

Method to determine the reading frame of a protein from the purine/pyrimidine genome sequence and its possible evolutionary justification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340673

22 September 2017

Strong doublet preferences in nucleotide sequences and DNA geometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340673

22 September 2017

Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340673

22 September 2017

Codon usage and tRNA content in unicellular and multicellular organisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340673

22 September 2017

Propagation of some human DNA sequences in bacteriophage lambda vectors requires mutant Escherichia coli hosts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340673

22 September 2017

A comprehensive package for DNA sequence analysis in FORTRAN IV for the PDP-11.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340673

22 September 2017

The universal dinucleotide asymmetry rules in DNA and the amino acid codon choice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340673

15 June 2018

Contextual constraints on synonymous codon choice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340673

15 June 2018

Sense codons are found in specific contexts.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340673

15 June 2018

Viability of λ phages carrying a perfect palindrome in the absence of recombination nucleases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340673

20 August 2018

Unusual frequencies of certain alternating purine-pyrimidine runs in natural DNA sequences: relation to Z-DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340673

20 August 2018

Molecular evolution of bacteriophages: evidence of selection against the recognition sites of host restriction enzymes

1 reference

https://pubmed.ncbi.nlm.nih.gov/3550700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/3550700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcriptional block caused by a negative supercoiling induced structural change in an alternating CG sequence

1 reference

https://pubmed.ncbi.nlm.nih.gov/3550700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Selection pressures on codon usage in the complete genome of bacteriophage T7

1 reference

https://pubmed.ncbi.nlm.nih.gov/3550700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Selection againstdam methylation sites in the genomes of DNA of enterobacteriophages

1 reference

https://pubmed.ncbi.nlm.nih.gov/3550700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/15.6.2627

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3550700%20AND%20SRC:MED&resulttype=core&format=json

28 September 2019

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3550700%20AND%20SRC:MED&resulttype=core&format=json

28 September 2019

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3550700%20AND%20SRC:MED&resulttype=core&format=json

28 September 2019

ResearchGate publication ID

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