(Q33963677)

30 July 2017

title

The reality of pervasive transcription (English)

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30 July 2017

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30 July 2017

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30 July 2017

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30 July 2017

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30 July 2017

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30 July 2017

Michael B Clark

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Paulo P Amaral

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Joel S Rozowsky

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John L Rinn

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Piero Carninci

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Yoshihide Hayashizaki

series ordinal

object named as

Yoshihide Hayashizaki

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30 July 2017

Mark B Gerstein

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30 July 2017

Ryan J Taft

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30 July 2017

Claes Wahlestedt

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30 July 2017

Felix J Schlesinger

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30 July 2017

Kevin V Morris

series ordinal

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30 July 2017

Antonin Morillon

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30 July 2017

language of work or name

English

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publication date

12 July 2011

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30 July 2017

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30 July 2017

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30 July 2017

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30 July 2017

page(s)

e1000625; discussion e1001102

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Creative Commons Attribution 4.0 International

30 July 2017

start time

12 July 2011

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April 2022 Public Data File from Crossref

copyrighted

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cites work

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Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA.

5 July 2018

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Intergenic and repeat transcription in human, chimpanzee and macaque brains measured by RNA-Seq

5 July 2018

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Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

Dark matter transcripts: sound and fury, signifying nothing?

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

Most "dark matter" transcripts are associated with known genes

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

5 July 2018

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Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

5 July 2018

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Pervasive transcription of the eukaryotic genome: functional indices and conceptual implications

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

Pervasive transcription constitutes a new level of eukaryotic genome regulation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

Digital transcriptome profiling using selective hexamer priming for cDNA synthesis

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

Conserved introns reveal novel transcripts in Drosophila melanogaster

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

TopHat: discovering splice junctions with RNA-Seq

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

Equal numbers of neuronal and nonneuronal cells make the human brain an isometrically scaled-up primate brain

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

Long non-coding RNAs: insights into functions

5 July 2018

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Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs

5 July 2018

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Noncoding RNA in development

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

Specific expression of long noncoding RNAs in the mouse brain

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

RNA maps reveal new RNA classes and a possible function for pervasive transcription

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

Functionality of intergenic transcription: an evolutionary comparison

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

An RNA gene expressed during cortical development evolved rapidly in humans

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

Complex Loci in human and mouse genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

Genome-wide analysis of mammalian promoter architecture and evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

Antisense transcription in the mammalian transcriptome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

The transcriptional landscape of the mammalian genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

Global identification of human transcribed sequences with genome tiling arrays

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

Antisense intronic non-coding RNA levels correlate to the degree of tumor differentiation in prostate cancer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

The transcriptional activity of human Chromosome 22

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

Large-scale transcriptional activity in chromosomes 21 and 22

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

A Transcript Map for the 2.8-Mb Region Containing the Multiple Endocrine Neoplasia Type 1 Locus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134446

The evolution of gene regulation, the RNA universe, and the vexed questions of artefact and noise

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1000625

A ncRNA modulates histone modification and mRNA induction in the yeast GAL gene cluster

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1000625

Genomics: Not-so-dark genome

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1000625

10.1371/JOURNAL.PBIO.1000625

21 January 2018

Identifiers

DOI

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30 July 2017

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30 July 2017

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