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A phylogenomic study of DNA repair genes, proteins, and processes

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Europe PubMed Central

PubMed publication ID

29 July 2017

A phylogenomic study of DNA repair genes, proteins, and processes (English)

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Europe PubMed Central

PubMed publication ID

29 July 2017

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based on heuristic

inferred from title

Jonathan A. Eisen

1

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Europe PubMed Central

PubMed publication ID

29 July 2017

author name string

P C Hanawalt

2

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Europe PubMed Central

PubMed publication ID

29 July 2017

language of work or name

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publication date

1 December 1999

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Europe PubMed Central

PubMed publication ID

29 July 2017

Mutation Research

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Europe PubMed Central

PubMed publication ID

29 July 2017

435

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Europe PubMed Central

PubMed publication ID

29 July 2017

3

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

171-213

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Europe PubMed Central

PubMed publication ID

29 July 2017

Genome Sequence of the Radioresistant Bacterium Deinococcus radiodurans R1

1 reference

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Repair of apurinic/apyrimidinic sites by UV damage endonuclease; a repair protein for UV and oxidative damage

1 reference

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Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima

1 reference

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1 reference

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1 reference

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MED1, a novel human methyl-CpG-binding endonuclease, interacts with DNA mismatch repair protein MLH1

1 reference

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Proteome composition and codon usage in spirochaetes: species-specific and DNA strand-specific mutational biases

1 reference

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Conserved domains in DNA repair proteins and evolution of repair systems

1 reference

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Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori

1 reference

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Molecular cloning of AtMMH, an Arabidopsis thaliana ortholog of the Escherichia coli mutM gene, and analysis of functional domains of its product.

1 reference

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Molecular characterization of the Lactococcus lactis LlaKR2I restriction-modification system and effect of an IS982 element positioned between the restriction and modification genes

1 reference

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Nucleotide excision repair in the third kingdom

1 reference

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Genome Sequence of an Obligate Intracellular Pathogen of Humans: Chlamydia trachomatis

1 reference

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Biological effects of high ultraviolet radiation on early earth--a theoretical evaluation

1 reference

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A phylogenomic study of the MutS family of proteins

1 reference

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Complete Sequence and Gene Organization of the Genome of a Hyper-thermophilic Archaebacterium, Pyrococcus horikoshii OT3

1 reference

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Complete Genome Sequence of Treponema pallidum, the Syphilis Spirochete

1 reference

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The SbcCD nuclease of Escherichia coli is a structural maintenance of chromosomes (SMC) family protein that cleaves hairpin DNA

1 reference

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The 3' to 5' exonuclease activity of Mre 11 facilitates repair of DNA double-strand breaks

1 reference

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Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence

1 reference

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Alternative repair pathways for UV-induced DNA damage

1 reference

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Thermostable archaeal O6-alkylguanine-DNA alkyltransferases

1 reference

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Mitochondrial targeting of human DNA glycosylases for repair of oxidative DNA damage

1 reference

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Chromosome dynamics: the SMC protein family

1 reference

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The phylogenetic relationships of Chlorobium tepidum and Chloroflexus aurantiacus based upon their RecA sequences

1 reference

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The hMre11/hRad50 protein complex and Nijmegen breakage syndrome: linkage of double-strand break repair to the cellular DNA damage response

1 reference

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DNA strand invasion promoted by Escherichia coli RecT protein

1 reference

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Structure and function of mammalian DNA ligases

1 reference

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The complete genome of the hyperthermophilic bacterium Aquifex aeolicus

1 reference

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Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis

1 reference

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Recognition and manipulation of branched DNA by the RusA Holliday junction resolvase of Escherichia coli

1 reference

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Structural basis for MutH activation in E.coli mismatch repair and relationship of MutH to restriction endonucleases

1 reference

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Thermostable repair enzyme for oxidative DNA damage from extremely thermophilic bacterium, Thermus thermophilus HB8.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

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Processing of recombination intermediates by the RuvABC proteins

1 reference

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Identification of the lactococcal exonuclease/recombinase and its modulation by the putative Chi sequence.

1 reference

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Ku protein stimulates DNA end joining by mammalian DNA ligases: a direct role for Ku in repair of DNA double-strand breaks

1 reference

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Mismatch repair: origin of species?

1 reference

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Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi

1 reference

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To be a mutator, or how pathogenic and commensal bacteria can evolve rapidly

1 reference

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The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus

1 reference

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The Bloom's Syndrome Gene Product Is a 3′-5′ DNA Helicase

1 reference

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The complete genome sequence of the gram-positive bacterium Bacillus subtilis

1 reference

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Human Blue‐light Photoreceptor hCRY2 Specifically Interacts with Protein Serine/Threonine Phosphatase 5 and Modulates Its Activity

1 reference

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Recombination initiation: easy as A, B, C, D... chi?

1 reference

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Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics

1 reference

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AGAINST ALL ODDS: The Survival Strategies of Deinococcus radiodurans

1 reference

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Genetic variability and adaptation to stress

1 reference

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Gastrogenomic delights: a movable feast

1 reference

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Double Strand Break Repair

1 reference

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DNA damage-dependent recruitment of nucleotide excision repair and transcription proteins to Escherichia coli inner membranes

1 reference

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Nucleotide Excision Repair in Mammalian Cells

1 reference

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5 July 2018

The Werner syndrome protein is a DNA helicase

1 reference

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The complete genome sequence of Escherichia coli K-12

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

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The complete genome sequence of the gastric pathogen Helicobacter pylori

1 reference

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Yeast DNA ligase IV mediates non-homologous DNA end joining

1 reference

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5 July 2018

DNA glycosylases in the base excision repair of DNA

1 reference

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Cloning and characterization of hOGG1, a human homolog of the OGG1 gene of Saccharomyces cerevisiae

1 reference

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Archaea and the Origin(s) of DNA Replication Proteins

1 reference

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Cloning and characterization of a mammalian 8-oxoguanine DNA glycosylase

1 reference

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Evolution of high mutation rates in experimental populations of E. coli

1 reference

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Cloning of a human homolog of the yeast OGG1 gene that is involved in the repair of oxidative DNA damage

1 reference

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Escherichia coli endonuclease VIII: cloning, sequencing, and overexpression of the nei structural gene and characterization of nei and nei nth mutants

1 reference

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recF and recR are required for the resumption of replication at DNA replication forks in Escherichia coli

1 reference

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Chlorella virus PBCV-1 encodes a homolog of the bacteriophage T4 UV damage repair gene denV

1 reference

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The FEN-1 family of structure-specific nucleases in eukaryotic DNA replication, recombination and repair

1 reference

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5 July 2018

There is substantial agreement among interspecies estimates of DNA repair activity

1 reference

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Isolation and characterization of rad51 orthologs from Coprinus cinereus and Lycopersicon esculentum, and phylogenetic analysis of eukaryotic recA homologs

1 reference

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5 July 2018

Nuclear and mitochondrial uracil-DNA glycosylases are generated by alternative splicing and transcription from different positions in the UNG gene

1 reference

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5 July 2018

Cloning and characterization of a functional human homolog of Escherichia coli endonuclease III

1 reference

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5 July 2018

Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae

1 reference

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5 July 2018

SGS1, a homologue of the Bloom's and Werner's syndrome genes, is required for maintenance of genome stability in Saccharomyces cerevisiae

1 reference

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5 July 2018

Sequence Analysis of the Genome of the Unicellular Cyanobacterium Synechocystis sp. Strain PCC6803. II. Sequence Determination of the Entire Genome and Assignment of Potential Protein-coding Regions

1 reference

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5 July 2018

Spontaneous mutators in bacteria: insights into pathways of mutagenesis and repair

1 reference

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5 July 2018

Molecular biology of mycoplasmas

1 reference

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5 July 2018

Counteracting the mutagenic effect of hydrolytic deamination of DNA 5-methylcytosine residues at high temperature: DNA mismatch N-glycosylase Mig.Mth of the thermophilic archaeon Methanobacterium thermoautotrophicum THF

1 reference

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5 July 2018

High mutation frequencies among Escherichia coli and Salmonella pathogens

1 reference

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5 July 2018

A new class of uracil-DNA glycosylases related to human thymine-DNA glycosylase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

SOS response as an adaptive response to DNA damage in prokaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Life with 6000 genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Homologous recombination proteins in prokaryotes and eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Genetic barriers among bacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Mismatch repair in replication fidelity, genetic recombination, and cancer biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

DNA excision repair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

The conjugal transfer system of Agrobacterium tumefaciens octopine-type Ti plasmids is closely related to the transfer system of an IncP plasmid and distantly related to Ti plasmid vir genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

The tra region of the nopaline-type Ti plasmid is a chimera with elements related to the transfer systems of RSF1010, RP4, and F

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Identification of essential residues in Thermus thermophilus DNA ligase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Nucleotide excision repair: variations associated with cancer development and speciation

1 reference

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5 July 2018

Structural basis for the excision repair of alkylation-damaged DNA

1 reference

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5 July 2018

Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Cloning and sequencing a human homolog (hMYH) of the Escherichia coli mutY gene whose function is required for the repair of oxidative DNA damage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Biochemistry and genetics of eukaryotic mismatch repair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Identification of the structural and functional domains of MutY, an Escherichia coli DNA mismatch repair enzyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

The Streptomyces peucetius drrC gene encodes a UvrA-like protein involved in daunorubicin resistance and production

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Cloning and expression in Escherichia coli of the OGG1 gene of Saccharomyces cerevisiae, which codes for a DNA glycosylase that excises 7,8-dihydro-8-oxoguanine and 2,6-diamino-4-hydroxy-5-N-methylformamidopyrimidine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Positional cloning of the Werner's syndrome gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

The Mfd protein of Bacillus subtilis 168 is involved in both transcription-coupled DNA repair and DNA recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

The RecA protein as a model molecule for molecular systematic studies of bacteria: comparison of trees of RecAs and 16S rRNAs from the same species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Spiroplasma citri virus SpV1-derived cloning vector: deletion formation by illegitimate and homologous recombination in a spiroplasmal host strain which probably lacks a functional recA gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Isolation and characterization of the human MRE11 homologue

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Menage à trois: double strand break repair, V(D)J recombination and DNA-PK.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Evidence for lack of DNA photoreactivating enzyme in humans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Mechanism of action of the Escherichia coli UvrABC nuclease: clues to the damage recognition problem

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Cell cycle regulation of a human cyclin-like gene encoding uracil-DNA glycosylase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Nucleotide excision repair. II: From yeast to mammals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Nucleotide excision repair I: from E. coli to yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Resolution of Holliday intermediates in recombination and DNA repair: indirect suppression of ruvA, ruvB, and ruvC mutations.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Genetic and molecular analyses of the C-terminal region of the recE gene from the Rac prophage of Escherichia coli K-12 reveal the recT gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Protein family classification based on searching a database of blocks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Homologous pairing proteins encoded by the Escherichia coli recE and recT genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Processing of Holliday junctions by the Escherichia coli RuvA, RuvB, RuvC and RecG proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Efficient removal of uracil from G.U mispairs by the mismatch-specific thymine DNA glycosylase from HeLa cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Structure and function of the DNA repair enzyme exonuclease III from E. coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Homologous genetic recombination: the pieces begin to fall into place

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

A new ATP-independent DNA endonuclease from Schizosaccharomyces pombe that recognizes cyclobutane pyrimidine dimers and 6-4 photoproducts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Biochemistry of homologous recombination in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Interspecies gene exchange in bacteria: the role of SOS and mismatch repair systems in evolution of species.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Characterization of a mammalian homolog of the Escherichia coli MutY mismatch repair protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Processing of intermediates in recombination and DNA repair: identification of a new endonuclease that specifically cleaves Holliday junctions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Repair of oxidative DNA damage in gram-positive bacteria: the Lactococcus lactis Fpg protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Structure and function of apurinic/apyrimidinic endonucleases.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Structure, Function, and Inhibition of O6-Alkylguanine-DNA Alkyltransferase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Two recA genes in Myxococcus xanthus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

The Bloom's syndrome gene product is homologous to RecQ helicases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

The Minimal Gene Complement of Mycoplasma genitalium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

PIK-related kinases: DNA repair, recombination, and cell cycle checkpoints

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Purification and cloning of Micrococcus luteus ultraviolet endonuclease, an N-glycosylase/abasic lyase that proceeds via an imino enzyme-DNA intermediate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

The Ribosomal Database project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Pseudogenes as a paradigm of neutral evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

DNA strand exchanges

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

The mutY gene: a mutator locus in Escherichia coli that generates G.C----T.A transversions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Escherichia coli mutY gene product is required for specific A-G----C.G mismatch correction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

mutM, a second mutator locus in Escherichia coli that generates G.C----T.A transversions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Thymineless death in Escherichia coli mutants deficient in the RecF recombination pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Chromosomal location and evolutionary rate variation in enterobacterial genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Induction of the Escherichia coli lactose operon selectively increases repair of its transcribed DNA strand

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

A human nuclear uracil DNA glycosylase is the 37-kDa subunit of glyceraldehyde-3-phosphate dehydrogenase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Mechanisms and biological effects of mismatch repair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

MutM, a protein that prevents G C→T A transversions, is formamidopyrimidine-DNA glycosylase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

Repair of DNA containing O6-alkylguanine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

DNA Repair in Bacteria and Mammalian Cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

5 July 2018

DNA repair in Mycobacterium tuberculosis. What have we learnt from the genome sequence?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

29 October 2018

Antimutagenic role of base-excision repair enzymes upon free radical-induced DNA damage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

29 October 2018

SMC protein complexes and higher-order chromosome dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

29 October 2018

DNA strand exchange proteins: a biochemical and physical comparison.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

29 October 2018

The O6-methylguanine-DNA methyltransferase from the hyperthermophilic archaeon Pyrococcus sp. KOD1: a thermostable repair enzyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

29 October 2018

The Escherichia coli ATP-binding cassette (ABC) proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

29 October 2018

Molecular Evolution of the Photolyase–Blue-Light Photoreceptor Family

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

29 October 2018

Roles of the recG gene product of Escherichia coli in recombination repair: effects of the delta recG mutation on cell division and chromosome partition.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

29 October 2018

The repair of ultraviolet light-induced DNA damage in the halophilic archaebacteria, Halobacterium cutirubrum, Halobacterium halobium and Haloferax volcanii

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

29 October 2018

Structural and functional similarities between the SbcCD proteins of Escherichia coli and the RAD50 and MRE11 (RAD32) recombination and repair proteins of yeast.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

29 October 2018

Involvement of RecE exonuclease and RecT annealing protein in DNA double-strand break repair by homologous recombination.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

29 October 2018

DNA mismatch repair and synonymous codon evolution in mammals.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

29 October 2018

Cloning and characterization of the recA genes from Mycoplasma pulmonis and M. mycoides subsp. mycoides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

29 October 2018

Structure and function of transcription-repair coupling factor. I. Structural domains and binding properties.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

29 October 2018

Substrate preferences of Vsr DNA mismatch endonuclease and their consequences for the evolution of the Escherichia coli K-12 genome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

29 October 2018

Intrastrand parity rules of DNA base composition and usage biases of synonymous codons.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

29 October 2018

Isolation and genetic characterization of a thymineless death-resistant mutant of Escherichia coli K12: identification of a new mutation (recQ1) that blocks the RecF recombination pathway.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

29 October 2018

Ligation of oligonucleotides by pyrimidine dimers—a missing ‘link’ in the origin of life?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

29 October 2018

Domainal evolution of a prokaryotic DNA repair protein and its relationship to active-transport proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

29 October 2018

Using Evolutionary Trees in Protein Secondary Structure Prediction and Other Comparative Sequence Analyses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

29 October 2018

DNA Repair and the Evolution of Longevity: A Critical Analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158673

29 October 2018

A new member of the endonuclease III family of DNA repair enzymes that removes methylated purines from DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/10606811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The repair of DNA methylation damage in Saccharomyces cerevisiae

1 reference

https://pubmed.ncbi.nlm.nih.gov/10606811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Properties of a Recombinant Human Uracil-DNA Glycosylase from the UNG Gene and Evidence that UNG Encodes the Major Uracil-DNA Glycosylase

1 reference

https://pubmed.ncbi.nlm.nih.gov/10606811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization ofEscherichia coliEndonuclease VIII

1 reference

https://pubmed.ncbi.nlm.nih.gov/10606811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcription-repair coupling factor is involved in carbon catabolite repression of the Bacillus subtilis hut and gnt operons

1 reference

https://pubmed.ncbi.nlm.nih.gov/10606811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dissection of the Sequence Specificity of the Holliday Junction Endonuclease CCE1†

1 reference

https://pubmed.ncbi.nlm.nih.gov/10606811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Uracil-DNA glycosylase activities in hyperthermophilic micro-organisms

1 reference

https://pubmed.ncbi.nlm.nih.gov/10606811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Non-orthologous gene displacement

1 reference

https://pubmed.ncbi.nlm.nih.gov/10606811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Photosensitized splitting of thymine dimers in DNA by gene 32 protein from phage T 4

1 reference

https://pubmed.ncbi.nlm.nih.gov/10606811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Photomonomerization of pyrimidine dimers by indoles and proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/10606811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Monomerization of pyrimidine dimers in DNA by tryptophan-containing peptides: wavelength dependence

1 reference

https://pubmed.ncbi.nlm.nih.gov/10606811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

What's old is new: an alternative DNA excision repair pathway

1 reference

https://pubmed.ncbi.nlm.nih.gov/10606811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Highly Variable Mutation Rates in Commensal and Pathogenic Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/10606811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogenies and the Comparative Method

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2899%2900050-6

7 January 2021

based on heuristic

inferred from DOI database lookup

Non-orthologous gene displacement

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2899%2900050-6

7 January 2021

based on heuristic

inferred from DOI database lookup

Nothing in Biology Makes Sense except in the Light of Evolution

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2899%2900050-6

7 January 2021

based on heuristic

inferred from DOI database lookup

Identifiers

10.1016/S0921-8777(99)00050-6

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

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