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pangenome-analysis

Here are 5 public repositories matching this topic...

gi-bielefeld / pangrowth

Pangenome openness from k-mers or genes

kmer dna-sequences kmer-counting pangenomic-analysis pangenomes pangenome-analysis

Updated Nov 22, 2024
C

macyEpell / PAPER_Pell_NatureCommunications_2024

This repository contains scripts used to collect and analyze data from whole genome sequences of clinical Streptococcus agalactiae (Group B Strep) isolates for the project described in the following manuscript: Pell, M.E. et al., bioRxiv, 2024-04-01.

variant-calling whole-genome-sequencing antibiotic-resistance virulence-genes streptococcus-agalactiae bacterial-genomics pangenome-analysis

Updated Jun 17, 2024
R

applicativesystem / rust-metagenome-pangenome

a rust metagenome-pangenome analyzer

bioinformatics rust-lang metagenomes bioinformatics-analysis bioinformatics-databases pangenome metagenome-assembled-genomes pangenome-inference pangenome-analysis

Updated Nov 17, 2024
Rust

downingtim / LSDV_PVG

NA

virus evolution pangenomics pangenome pangenomic-analysis heaps-law pangenome-clustering pangenome-inference pangenome-pipeline gpv pangenome-graph pangenome-growth pangenome-analysis poxvirus lsdv sppv goatpox sheeppox

Updated Oct 24, 2024

iliapopov17 / NGS-Handbook

🧐Handbook for NGS data analysis

phylogenetics genome-variation ngs-analysis manuals quality-check 16s-rrna pangenome-analysis

Updated Oct 20, 2024
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