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Issues list

Broken link: tutorial for cell type annotation bug Something isn't working
#97 opened Mar 15, 2023 by yangjun9095
Update dsb interface enhancement New feature or request prot Related to the muon.prot module
#42 opened Oct 8, 2021 by gtca
Datasets module enhancement New feature or request
#45 opened Dec 6, 2021 by ivirshup
3
Plotting function should document parameters better enhancement New feature or request good first issue Good for newcomers
#50 opened Feb 16, 2022 by gtca
Peak GC content quantification in ATAC module atac Related to the muon.atac module enhancement New feature or request
#54 opened Apr 8, 2022 by emdann
1
Incorrect behavior in muon.atac.tl.count_fragments_features atac Related to the muon.atac module bug Something isn't working
#59 opened May 21, 2022 by kchiou v0.1.7
2
Documentation for muon.atac.tl.scan_sequences not up to date atac Related to the muon.atac module documentation Improvements or additions to documentation
#60 opened May 25, 2022 by gjhuizing
1
concatenate muon objects enhancement New feature or request
#64 opened Jul 1, 2022 by vjbaskar
1
muon.atac.tl.count_fragments_features atac bug bug Something isn't working
#68 opened Aug 3, 2022 by Chengwei94
2
core dumped when run 'mu.pp.neighbors(mdata, key_added='wnn')'
#81 opened Dec 15, 2022 by 111kakaluote
4
Clearer documentation for ac.tl.lsi enhancement New feature or request
#87 opened Jan 9, 2023 by alexlenail v0.1.7
1
Any plan to add footprints module for ATAC-seq? enhancement New feature or request
#90 opened Jan 28, 2023 by lzj1769
1
Introduce explicit syntax to detach backed modalities enhancement New feature or request
#19 opened Dec 14, 2020 by gtca
@ilia-kats
atac.pp.scopen fails while allocating a second array after computing scopen but before writing result to disk bug Something isn't working
#92 opened Feb 3, 2023 by alexlenail
4
Make code that retrieves values from obs/X/layer/raw of the different modalities a public function enhancement New feature or request
#98 opened Mar 29, 2023 by grst
Adopt cookiecutter-scverse template enhancement New feature or request
#103 opened Apr 28, 2023 by grst v0.2.0
Count fragment function counts duplicates bug Something isn't working
#110 opened Jun 12, 2023 by lauradmartens v0.2.0
MOFA on multiple groups with single view enhancement New feature or request
#113 opened Jun 25, 2023 by martinrohbeck
1
Negative values after pt.pp.dsb bug Something isn't working
#116 opened Jul 28, 2023 by ChaseTaylor939
1
OSError: Unable to synchronously create attribute (object header message is too large)
#118 opened Aug 4, 2023 by zhouzhendiao
1
"OptionError: 'Pattern matched multiple keys'" traceback in tutorial bug Something isn't working
#119 opened Aug 4, 2023 by chris-rands
MOFA error when data has been created using axis=-1
#122 opened Aug 23, 2023 by dawe
4
Batch correction for joint modality umap enhancement New feature or request
#123 opened Aug 23, 2023 by GirayEryilmaz
Enable gene_symbols argument in mu.pl.embedding enhancement New feature or request
#124 opened Aug 30, 2023 by racng
1
Add trusted publishing enhancement New feature or request
#150 opened Oct 25, 2024 by flying-sheep
1 of 3 tasks
1
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