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mapping HiFi reads using .mmi generated with -x map-ont #1196

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Geil625 opened this issue Apr 19, 2024 · 0 comments
Open

mapping HiFi reads using .mmi generated with -x map-ont #1196

Geil625 opened this issue Apr 19, 2024 · 0 comments

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@Geil625
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Geil625 commented Apr 19, 2024

Hi,

I indexed reference genome using default -x mode which fits ONT reads. But afterwards I mapped the HiFi reads based on the ONT-fit mmi file. I wonder if it would cause any problems? Look forward to your reply.

Cheers,
Sang He
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@Geil625