A collaboratively written review paper on deep learning, genomics, and precision medicine

Ten Simple Rules for Deep Learning in Biology

Template job submissions using GPUs in CHTC

SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation

Materials for a workshop introducing machine learning to biologists

Prize-Collecting Steiner Forests for Interactomes

HPC Python lesson materials

Curated summary of efforts to promote equity, diversity, and inclusion in computational biology PhD programs and societies.

Connect the dots in networks.

Manuscript for perspective on machine learning in rare disease

Temporal Pathway Synthesizer

Fork me to create your manuscript

A collection of lua filters for pandoc

Software Carpentry introduction to Git for novices.

Supplemental scripts and analyses for the SINGE manuscript

comparing drug classification methods

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

Styles for The Carpentries lessons. Documentation at http://carpentries.github.io/lesson-example/.

Tensorflow implementation of MolGAN: An implicit generative model for small molecular graphs (https://arxiv.org/abs/1805.11973)

Manuscript describing the Deep Review Collaborative Workflow and Manubot System

The official sources for the RDKit library

Analytical LWFA scaling laws applied to CETAL

The data model for Drosophila Time Series experiments

Mapping in R