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@QuIIL Quantitative Imaging and Informatics Laboratory (QuIIL)

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    32 repositories

    • CAMP

      Public
      Implementation of "CAMP: Continuous and Adaptive Learning Model in Pathology"
      Python
      •
      Other
      •0•0•0•0•Updated Oct 13, 2024Oct 13, 2024

    • MECFormer

      Public
      Official implementation of MECFormer: Multi-task Whole Slide Image Classification with Expert Consultation Network
      1•0•0•0•Updated Oct 6, 2024Oct 6, 2024

    • BenchmarkingPathologyFoundationModels

      Public
      Python
      •1•0•0•0•Updated Sep 5, 2024Sep 5, 2024

    • TQx

      Public
      Towards a text-based quantitative and explainable histopathology image analysis (MICCAI 2024)
      computational-pathologyvision-language-model
      Python
      •
      MIT License
      •1•2•0•0•Updated Aug 5, 2024Aug 5, 2024

    • SCUBa-Net

      Public
      Implementation of SCUBa-Net: "Spatially-constrained and -unconstrained bi-graph interaction network for multi-organ pathology image classification."
      Python
      •1•0•0•0•Updated Jul 29, 2024Jul 29, 2024

    • DAX-Net

      Public
      Implementation of DAX-Net: "DAX-Net: a dual-branch dual-task adaptive cross-weight feature fusion network for robust multi-class cancer classification in pathology images."
      Python
      •1•2•0•0•Updated Jul 27, 2024Jul 27, 2024

    • KBSMC_colon_cancer_grading_dataset

      Public
      KBSMC colon cancer grading dataset repository
      colon-cancercancer-gradinghistopathology-image-analysis
      Python
      •
      MIT License
      •0•8•0•0•Updated Jul 26, 2024Jul 26, 2024

    • QuIIL_thompson_solution

      Public
      Official implementation of solutions for the Thompson challenge, encompassing Track 1 - Tasks 1 & 2: Action Recognition & Anticipation, and Track 2 - Task 1: Visual Question Answering (VQA).
      Python
      •0•1•0•0•Updated Jul 19, 2024Jul 19, 2024

    • FALFormer

      Public
      Implementation of "Feature-aware Landmarks self-attention for Whole-slide Image Classification"
      Python
      •0•0•0•0•Updated Jul 19, 2024Jul 19, 2024

    • MoMA

      Public
      MoMA: Momentum Contrastive Learning with Multi-head Attention-based Knowledge Distillation for Histopathology Image Analysis
      Python
      •1•0•0•0•Updated Jan 2, 2024Jan 2, 2024

    • CaMeLNet

      Public
      CaMeL-Net : Centroid-aware Metric Learning for Efficient Multi-class Cancer Classification in Pathology Images
      Python
      •1•0•0•0•Updated Dec 5, 2023Dec 5, 2023

    • KBSMC_gastric_cancer_grading_dataset

      Public
      KBSMC colon cancer grading dataset repository
      Python
      •
      MIT License
      •1•0•0•0•Updated Dec 5, 2023Dec 5, 2023

    • CaFeNet

      Public
      CaFe-Net : Centroid-aware feature recalibration for cancer grading in pathology images
      Python
      •1•0•0•0•Updated Nov 30, 2023Nov 30, 2023

    • Sonnet_pytorch

      Public
      sonnet implemented with pytorch
      Python
      •2•0•0•0•Updated Oct 16, 2023Oct 16, 2023

    • ICCV_2023_CVAMD-Order-ViT-

      Public
      Order-ViT: Order Learning Vision Transformer for Cancer Classification in Pathology Images
      Python
      •1•0•0•0•Updated Sep 7, 2023Sep 7, 2023

    • KD_CoRFF

      Public
      DART_MICCAI2023: Boosting knowledge distillation via random Fourier features for prostate cancer grading in histopathology images
      Python
      •1•0•0•0•Updated Aug 10, 2023Aug 10, 2023

    • GPC

      Public
      GPC: Generative and general pathology image classifier (MedAGI 2023)
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 7, 2023Aug 7, 2023

    • JCO_Learning-pytorch

      Public
      Medical Image Analysis (MEDIA) paper: Joint Categorical and Ordinal Learning for Cancer Grading in Pathology Images
      Python
      •
      MIT License
      •4•1•0•0•Updated Jun 1, 2023Jun 1, 2023

    • MSBP_Net

      Public
      IEEE J-BHI paper: MSBP_Net: Multi-scale binary pattern encoding network for cancer classification in pathology images
      Python
      •
      MIT License
      •2•0•0•0•Updated Jun 1, 2023Jun 1, 2023

    • IMPash

      Public
      ECCV-MCV2022 paper: "IMPaSh: A Novel Domain-shift Resistant Representation for Colorectal Cancer Tissue Classification"
      Python
      •
      Other
      •4•0•0•0•Updated Nov 8, 2022Nov 8, 2022

    • Grad_Mix

      Public
      GradMix for nuclei segmentation and classification in imbalanced pathology image datasets: MICCAI 2022
      augmentationimbalanced-datasonnetnuclei-segmentationnuclei-classification
      Jupyter Notebook
      •
      GNU General Public License v2.0
      •0•8•0•0•Updated Sep 29, 2022Sep 29, 2022

    • KBSMC_colon_tma_cancer_grading_1024_dataset

      Public
      KBSMC_colon_tma_cancer_grading_1024_dataset
      datasetcolon-cancerhistopathology-images
      Python
      •1•1•1•0•Updated Aug 29, 2022Aug 29, 2022

    • Sonnet

      Public
      SONNET: A self-guided ordinal regression neural network for segmentation and classification of nuclei in large-scale multi-tissue histology images
      Python
      •2•13•0•0•Updated Sep 15, 2021Sep 15, 2021

    • Dataset-Region-Aggregated-Attention-CNN-for-Disease-Detection-in-Fruit-Images

      Public
      Dataset-Region-Aggregated-Attention-CNN-for-Disease-Detection-in-Fruit-Images
      0•0•0•0•Updated Sep 1, 2021Sep 1, 2021

    • Tumor-segmentation-PAIP2019

      Public
      Python
      •
      MIT License
      •3•0•0•0•Updated Aug 6, 2021Aug 6, 2021

    • HistopathologyMRI_Analysis

      Public
      Jupyter Notebook
      •2•0•0•0•Updated Jun 18, 2021Jun 18, 2021

    • dense-multipath-nn-prostate-segmentation

      Public
      This repository contains the code for prostate segmentation in MRI using deep dense multi-path neural network. To be updated...
      Python
      •0•1•0•0•Updated Jun 26, 2020Jun 26, 2020

    • UnsupervisedTumorCharacterizationCGAN

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated May 29, 2020May 29, 2020

    • QuPathTools

      Public
      Exporting and Importing Annotation from and to QuPath
      Groovy
      •2•0•0•0•Updated Aug 20, 2019Aug 20, 2019

    • hover_net

      Public
      Large scale study about nuclei instance segmentation method on H&E histopatholgy images.
      Python
      •
      MIT License
      •224•0•0•0•Updated Jun 26, 2019Jun 26, 2019