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Commits on Jul 2, 2024

• Add DOI badge from Zenodo to README.

  MatthiasZepper

  committed
  ed0f04e

Commits on Jun 28, 2024

• Version 1.5.0 release PR - "Able adenine"

  MatthiasZepper

  authored
  677f59b

Commits on Jun 17, 2024

• Merge pull request #13 from MatthiasZepper/Improved_thread_setting

  MatthiasZepper

  authored
  babdb13

• Update README.md

  

  MatthiasZepper

  and

  alneberg

  authored
  4af3d9b

Commits on Jun 3, 2024

• Small fixes in the Readme.

  MatthiasZepper

  committed
  3585661

Commits on May 28, 2024

• Update CLI help text for maximum thread number.

  MatthiasZepper

  committed
  bf57a71

Commits on May 27, 2024

• Added benchmark results to readme.

  MatthiasZepper

  committed
  152c1b4

Commits on May 24, 2024

• Push dev container image also when workflow is manually dispatched.

  MatthiasZepper

  committed
  caaaf2b

• Update Debian disto in Docker image from bullseye to bookworm (stable).

  MatthiasZepper

  committed
  d568f01

Commits on May 23, 2024

• Bump Docker build action.

  MatthiasZepper

  committed
  2e575a7

Commits on May 22, 2024

• Bump version in main.

  MatthiasZepper

  committed
  e058ec6

• Code formatting.

  MatthiasZepper

  committed
  690e31f

• Readme updates to accomodate the new multi-threaded output compression.

  MatthiasZepper

  committed
  ec8852c

• Create test for compression level setting.

  MatthiasZepper

  committed
  f774bf1

• Test for compressed output files as well.

  MatthiasZepper

  committed
  8d00d87

• Prepare the addition of binary test files to tests.

  MatthiasZepper

  committed
  8bffbce

• Alias bio::io::fastq::Reader as FastqReader analogous to FastqWriter.

  MatthiasZepper

  committed
  764fe38

Commits on May 7, 2024

• If multiple output files need to be written, I obviously can't use the max_threads for each.

  MatthiasZepper

  committed
  56442e4

Commits on May 6, 2024

• Implement multi-threaded FastQ compression for umi-transfer

  MatthiasZepper

  authored
  0ca36af

• Add shield.io badges to README.

  MatthiasZepper

  committed
  075d487

• Add Codecov upload.

  MatthiasZepper

  committed
  4d7814e

• Fixed the integration text that relies on an interactive prompt with the rexpect crate.

  MatthiasZepper

  committed
  1a0df50

• After the update, dialoguer doesn't show the prompt anymore, so can't test.

  MatthiasZepper

  committed
  6e116e2

• Update dependencies to latest.

  MatthiasZepper

  committed
  64152ea

• Attempt fixing issues detected by Clippy.

  MatthiasZepper

  committed
  2a25c00

• Update Tarpaulin command to include the integration tests as well.

  MatthiasZepper

  committed
  6786745

• Lint code

  MatthiasZepper

  committed
  6d3c414

• Directly map output writing error to RuntimeErrors::ReadWriteError

  MatthiasZepper

  committed
  2c5d250

• Integrate new multi-threaded writer into the main program.

  MatthiasZepper

  committed
  771c52f

• Finish the output writers: Integrate with bio::io::fastq::Writer

  MatthiasZepper

  committed
  532ac89

• Reimplement new writer logic for plain and compressed output.

  MatthiasZepper

  committed
  7ed7483

• Refactor functions and disentagle editing the FastQ records from writing them to the output file.

  MatthiasZepper

  committed
  b585b22

• Intermediate commit, refactor file for clarity.

  MatthiasZepper

  committed
  3f94806

• Doesn't work like this...dyn ZWriter cannot be sent between threads safely the trait Send is not implemented for dyn ZWriter

  MatthiasZepper

  committed
  5ecda09

• Drop custom types, due to name collisions those just complicated matters.

  MatthiasZepper

  committed
  3da0567

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