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- esyN (Easy Networks) is a bioinformatics web-tool for visualizing, building and analysing molecular interaction networks. esyN is based on cytoscape.js and its aim is to make it easy for everybody to perform network analysis. esyN is connected with a number of databases - specifically: pombase, flybase, and most InterMine data warehouses, DrugBank, and BioGRID from which its possible to download the protein protein or genetic interactions for any protein or gene in a number of different organisms. Networks published in esyN can be easily published in other websites using the methodology.<sup id="cite_ref-esyN-Tutorial_3-0" class="reference"><a href="#cite_note-esyN-Tutorial-3">[3]</a></sup></p><div id="toc" class="toc" role="navigation" aria-labelledby="mw-toc-heading"><input type="checkbox" role="button" id="toctogglecheckbox" class="toctogglecheckbox" style="display:none" /><div class="toctitle" lang="en" dir="ltr"><h2 id="mw-toc-heading">Contents</h2><span class="toctogglespan"><label class="toctogglelabel" for="toctogglecheckbox"></label></span></div><ul><li class="toclevel-1 tocsection-1"><a href="#Usage"><span class="tocnumber">1</span> <span class="toctext">Usage</span></a></li><li class="toclevel-1 tocsection-2"><a href="#See_also"><span class="tocnumber">2</span> <span class="toctext">See also</span></a></li><li class="toclevel-1 tocsection-3"><a href="#References"><span class="tocnumber">3</span> <span class="toctext">References</span></a></li><li class="toclevel-1 tocsection-4"><a href="#External_links"><span class="tocnumber">4</span> <span class="toctext">External links</span></a></li></ul></div><h2><span class="mw-headline" id="Usage">Usage</span><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=EsyN&action=edit§ion=1" title="Edit section: Usage">edit</a><span class="mw-editsection-bracket">]</span></span></h2><p>As of January 2016 esyN is being viewed by 1500 unique users a day (about 16000 a month) according to <a href="/wiki/Google_Analytics" title="Google Analytics">Google Analytics</a>.</p><p>The embedding capabilities of esyN are used by a number of databases to display their interaction data:</p><ul><li><a href="/wiki/FlyBase" title="FlyBase">FlyBase</a><sup id="cite_ref-4" class="reference"><a href="#cite_note-4">[4]</a></sup></li><li>FlyMine<sup id="cite_ref-5" class="reference"><a href="#cite_note-5">[5]</a></sup></li><li>HumanMine<sup id="cite_ref-6" class="reference"><a href="#cite_note-6">[6]</a></sup></li><li><a href="/wiki/PomBase" title="PomBase">PomBase</a><sup id="cite_ref-7" class="reference"><a href="#cite_note-7">[7]</a></sup></li></ul><h2><span class="mw-headline" id="See_also">See also</span><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=EsyN&action=edit§ion=2" title="Edit section: See also">edit</a><span class="mw-editsection-bracket">]</span></span></h2><ul><li><a href="/wiki/Computational_genomics" title="Computational genomics">Computational genomics</a></li><li><a href="/wiki/Metabolic_network_modelling" title="Metabolic network modelling">Metabolic network modelling</a></li><li><a href="/wiki/Protein%E2%80%93protein_interaction_prediction" title="Protein–protein interaction prediction">Protein–protein interaction prediction</a></li></ul><h2><span class="mw-headline" id="References">References</span><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=EsyN&action=edit§ion=3" title="Edit section: References">edit</a><span class="mw-editsection-bracket">]</span></span></h2><style data-mw-deduplicate="TemplateStyles:r1011085734">.mw-parser-output .reflist{font-size:90%;margin-bottom:0.5em;list-style-type:decimal}.mw-parser-output .reflist .references{font-size:100%;margin-bottom:0;list-style-type:inherit}.mw-parser-output .reflist-columns-2{column-width:30em}.mw-parser-output .reflist-columns-3{column-width:25em}.mw-parser-output .reflist-columns{margin-top:0.3em}.mw-parser-output .reflist-columns ol{margin-top:0}.mw-parser-output .reflist-columns li{page-break-inside:avoid;break-inside:avoid-column}.mw-parser-output .reflist-upper-alpha{list-style-type:upper-alpha}.mw-parser-output .reflist-upper-roman{list-style-type:upper-roman}.mw-parser-output .reflist-lower-alpha{list-style-type:lower-alpha}.mw-parser-output .reflist-lower-greek{list-style-type:lower-greek}.mw-parser-output .reflist-lower-roman{list-style-type:lower-roman}</style><div class="reflist"><div class="mw-references-wrap"><ol class="references"><li id="cite_note-1"><span class="mw-cite-backlink"><b><a href="#cite_ref-1">^</a></b></span> <span class="reference-text"><style data-mw-deduplicate="TemplateStyles:r1067248974">.mw-parser-output cite.citation{font-style:inherit;word-wrap:break-word}.mw-parser-output .citation q{quotes:"\"""\"""'""'"}.mw-parser-output .citation:target{background-color:rgba(0,127,255,0.133)}.mw-parser-output .id-lock-free a,.mw-parser-output .citation .cs1-lock-free a{background:linear-gradient(transparent,transparent),url("//upload.wikimedia.org/wikipedia/commons/6/65/Lock-green.svg")right 0.1em center/9px no-repeat}.mw-parser-output .id-lock-limited a,.mw-parser-output .id-lock-registration a,.mw-parser-output .citation .cs1-lock-limited a,.mw-parser-output .citation .cs1-lock-registration a{background:linear-gradient(transparent,transparent),url("//upload.wikimedia.org/wikipedia/commons/d/d6/Lock-gray-alt-2.svg")right 0.1em center/9px no-repeat}.mw-parser-output .id-lock-subscription a,.mw-parser-output .citation .cs1-lock-subscription a{background:linear-gradient(transparent,transparent),url("//upload.wikimedia.org/wikipedia/commons/a/aa/Lock-red-alt-2.svg")right 0.1em center/9px no-repeat}.mw-parser-output .cs1-ws-icon a{background:linear-gradient(transparent,transparent),url("//upload.wikimedia.org/wikipedia/commons/4/4c/Wikisource-logo.svg")right 0.1em center/12px no-repeat}.mw-parser-output .cs1-code{color:inherit;background:inherit;border:none;padding:inherit}.mw-parser-output .cs1-hidden-error{display:none;color:#d33}.mw-parser-output .cs1-visible-error{color:#d33}.mw-parser-output .cs1-maint{display:none;color:#3a3;margin-left:0.3em}.mw-parser-output .cs1-format{font-size:95%}.mw-parser-output .cs1-kern-left{padding-left:0.2em}.mw-parser-output .cs1-kern-right{padding-right:0.2em}.mw-parser-output .citation .mw-selflink{font-weight:inherit}</style><cite id="CITEREFBean2014" class="citation journal cs1">Bean; et al. (2014). <a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pmc/articles/PMC4152123">"esyN: Network Building, Sharing and Publishing"</a>. <i>PLOS ONE</i>. <b>9</b> (9): e106035. <a href="/wiki/Doi_(identifier)" class="mw-redirect" title="Doi (identifier)">doi</a>:<span class="cs1-lock-free" title="Freely accessible"><a rel="nofollow" class="external text" href="https://doi.org/10.1371%2Fjournal.pone.0106035">10.1371/journal.pone.0106035</a></span>. <a href="/wiki/PMC_(identifier)" class="mw-redirect" title="PMC (identifier)">PMC</a> <span class="cs1-lock-free" title="Freely accessible"><a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pmc/articles/PMC4152123">4152123</a></span>. <a href="/wiki/PMID_(identifier)" class="mw-redirect" title="PMID (identifier)">PMID</a> <a rel="nofollow" class="external text" href="//pubmed.ncbi.nlm.nih.gov/25181461">25181461</a>.</cite><span title="ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.jtitle=PLOS+ONE&rft.atitle=esyN%3A+Network+Building%2C+Sharing+and+Publishing.&rft.volume=9&rft.issue=9&rft.pages=e106035&rft.date=2014&rft_id=%2F%2Fwww.ncbi.nlm.nih.gov%2Fpmc%2Farticles%2FPMC4152123%23id-name%3DPMC&rft_id=info%3Apmid%2F25181461&rft_id=info%3Adoi%2F10.1371%2Fjournal.pone.0106035&rft.au=Bean&rft_id=%2F%2Fwww.ncbi.nlm.nih.gov%2Fpmc%2Farticles%2FPMC4152123&rfr_id=info%3Asid%2Fen.wikipedia.org%3AEsyN" class="Z3988"></span></span></li><li id="cite_note-2"><span class="mw-cite-backlink"><b><a href="#cite_ref-2">^</a></b></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r1067248974"/><cite id="CITEREFHoffman2015" class="citation journal cs1">Hoffman; et al. (2015). <a rel="nofollow" class="external text" href="http://genetics.org/content/201/2/403.long">"An Ancient Yeast for Young Geneticists: A Primer on the Schizosaccharomyces pombe Model System"</a>. <i>Genetics</i>. <b>201</b> (2): 403–423. <a href="/wiki/Doi_(identifier)" class="mw-redirect" title="Doi (identifier)">doi</a>:<a rel="nofollow" class="external text" href="https://doi.org/10.1534%2Fgenetics.115.181503">10.1534/genetics.115.181503</a>. <a href="/wiki/PMC_(identifier)" class="mw-redirect" title="PMC (identifier)">PMC</a> <span class="cs1-lock-free" title="Freely accessible"><a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pmc/articles/PMC4596657">4596657</a></span>. <a href="/wiki/PMID_(identifier)" class="mw-redirect" title="PMID (identifier)">PMID</a> <a rel="nofollow" class="external text" href="//pubmed.ncbi.nlm.nih.gov/26447128">26447128</a>.</cite><span title="ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.jtitle=Genetics&rft.atitle=An+Ancient+Yeast+for+Young+Geneticists%3A+A+Primer+on+the+Schizosaccharomyces+pombe+Model+System&rft.volume=201&rft.issue=2&rft.pages=403-423&rft.date=2015&rft_id=%2F%2Fwww.ncbi.nlm.nih.gov%2Fpmc%2Farticles%2FPMC4596657%23id-name%3DPMC&rft_id=info%3Apmid%2F26447128&rft_id=info%3Adoi%2F10.1534%2Fgenetics.115.181503&rft.au=Hoffman&rft_id=http%3A%2F%2Fgenetics.org%2Fcontent%2F201%2F2%2F403.long&rfr_id=info%3Asid%2Fen.wikipedia.org%3AEsyN" class="Z3988"></span></span></li><li id="cite_note-esyN-Tutorial-3"><span class="mw-cite-backlink"><b><a href="#cite_ref-esyN-Tutorial_3-0">^</a></b></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r1067248974"/><cite class="citation web cs1"><a rel="nofollow" class="external text" href="http://www.esyn.org/tutorial.html">"Tutorial: Welcome to esyN"</a>. <i>esyN.org</i>. 2018<span class="reference-accessdate">. Retrieved <span class="nowrap">10 February</span> 2019</span>.</cite><span title="ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=unknown&rft.jtitle=esyN.org&rft.atitle=Tutorial%3A+Welcome+to+esyN&rft.date=2018&rft_id=http%3A%2F%2Fwww.esyn.org%2Ftutorial.html&rfr_id=info%3Asid%2Fen.wikipedia.org%3AEsyN" class="Z3988"></span></span></li><li id="cite_note-4"><span class="mw-cite-backlink"><b><a href="#cite_ref-4">^</a></b></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r1067248974"/><cite class="citation web cs1"><a rel="nofollow" class="external text" href="http://flybase.org/reports/FBig0000095901.html">"Physical Interaction report"</a>. <i><a href="/wiki/FlyBase" title="FlyBase">FlyBase</a></i>. 21 December 2018<span class="reference-accessdate">. Retrieved <span class="nowrap">10 February</span> 2019</span>.</cite><span title="ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=unknown&rft.jtitle=FlyBase&rft.atitle=Physical+Interaction+report&rft.date=2018-12-21&rft_id=http%3A%2F%2Fflybase.org%2Freports%2FFBig0000095901.html&rfr_id=info%3Asid%2Fen.wikipedia.org%3AEsyN" class="Z3988"></span></span></li><li id="cite_note-5"><span class="mw-cite-backlink"><b><a href="#cite_ref-5">^</a></b></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r1067248974"/><cite class="citation web cs1"><a rel="nofollow" class="external text" href="http://www.flymine.org/flymine/report.do?id=1007664">"Allele : ttk[MI01174] D. melanogaster"</a>. <i>FlyMine</i>. November 2018<span class="reference-accessdate">. Retrieved <span class="nowrap">10 February</span> 2019</span>.</cite><span title="ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=unknown&rft.jtitle=FlyMine&rft.atitle=Allele+%3A+ttk%5BMI01174%5D+D.+melanogaster&rft.date=2018-11&rft_id=http%3A%2F%2Fwww.flymine.org%2Fflymine%2Freport.do%3Fid%3D1007664&rfr_id=info%3Asid%2Fen.wikipedia.org%3AEsyN" class="Z3988"></span></span></li><li id="cite_note-6"><span class="mw-cite-backlink"><b><a href="#cite_ref-6">^</a></b></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r1067248974"/><cite class="citation web cs1"><a rel="nofollow" class="external text" href="http://www.humanmine.org/humanmine/report.do?id=127344656&trail=%7C127344656">"Report page"</a>. <i>HumanMine</i>. November 2018<span class="reference-accessdate">. Retrieved <span class="nowrap">10 February</span> 2019</span>.</cite><span title="ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=unknown&rft.jtitle=HumanMine&rft.atitle=Report+page&rft.date=2018-11&rft_id=http%3A%2F%2Fwww.humanmine.org%2Fhumanmine%2Freport.do%3Fid%3D127344656%26trail%3D%7C127344656&rfr_id=info%3Asid%2Fen.wikipedia.org%3AEsyN" class="Z3988"></span></span></li><li id="cite_note-7"><span class="mw-cite-backlink"><b><a href="#cite_ref-7">^</a></b></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r1067248974"/><cite class="citation web cs1"><a rel="nofollow" class="external text" href="http://www.pombase.org/browse-curation/fission-yeast-go-slim-terms">"Fission yeast GO slim"</a>. <i><a href="/wiki/PomBase" title="PomBase">PomBase</a></i><span class="reference-accessdate">. Retrieved <span class="nowrap">10 February</span> 2019</span>.</cite><span title="ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=unknown&rft.jtitle=PomBase&rft.atitle=Fission+yeast+GO+slim&rft_id=http%3A%2F%2Fwww.pombase.org%2Fbrowse-curation%2Ffission-yeast-go-slim-terms&rfr_id=info%3Asid%2Fen.wikipedia.org%3AEsyN" class="Z3988"></span></span></li></ol></div></div><h2><span class="mw-headline" id="External_links">External links</span><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=EsyN&action=edit§ion=4" title="Edit section: External links">edit</a><span class="mw-editsection-bracket">]</span></span></h2><ul><li><span class="official-website"><span class="url"><a rel="nofollow" class="external text" href="http://www.esyn.org/">Official website</a></span></span></li></ul><!-- NewPP limit reportParsed by mw1405Cached time: 20221203135223Cache expiry: 1814400Reduced expiry: falseComplications: [vary‐revision‐sha1, show‐toc]CPU time usage: 0.163 secondsReal time usage: 0.215 secondsPreprocessor visited node count: 1146/1000000Post‐expand include size: 20003/2097152 bytesTemplate argument size: 1475/2097152 bytesHighest expansion depth: 27/100Expensive parser function count: 2/500Unstrip recursion depth: 1/20Unstrip post‐expand size: 22985/5000000 bytesLua time usage: 0.090/10.000 secondsLua memory usage: 4227878/52428800 bytesNumber of Wikibase entities loaded: 1/400--><!--Transclusion expansion time report (%,ms,calls,template)100.00% 199.623 1 -total 61.16% 122.085 2 Template:Infobox 49.42% 98.660 1 Template:Reflist 45.39% 90.610 1 Template:Infobox_software 33.32% 66.521 2 Template:Cite_journal 19.70% 39.319 1 Template:Infobox_software/simple 9.70% 19.355 1 Template:Start_date_and_age 8.81% 17.591 5 Template:Cite_web 5.36% 10.693 1 Template:Time_ago 4.36% 8.694 1 Template:URL--><!-- Saved in parser cache with key enwiki:pcache:idhash:49168382-0!canonical and timestamp 20221203135223 and revision id 1082712689. --></div> (en)
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- esyN (Easy Networks) is a bioinformatics web-tool for visualizing, building and analysing molecular interaction networks. esyN is based on cytoscape.js and its aim is to make it easy for everybody to perform network analysis. esyN is connected with a number of databases - specifically: pombase, flybase, and most InterMine data warehouses, DrugBank, and BioGRID from which its possible to download the protein protein or genetic interactions for any protein or gene in a number of different organisms. (en)
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