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Attila Gürsoy
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- affiliation: Koç University, Istanbul, Turkey
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2020 – today
- 2024
- [j26]Damla Ovek
, Ozlem Keskin
ProInterVal: Validation of Protein-Protein Interfaces through Learned Interface Representations. J. Chem. Inf. Model. 64(8): 2979-2987 (2024) - [j25]Fatma Cankara
DiPPI: A Curated Data Set for Drug-like Molecules in Protein-Protein Interfaces. J. Chem. Inf. Model. 64(13): 5041-5051 (2024) - 2023
- [c16]Melisa Ece Zeylan, Attila Gürsoy, Simge Senyuz, Ozlem Keskin:
The interaction between mutated DYRK1A and APP suggests a potential target for vascular cognitive impairment. BIBM 2023: 1-7 - 2022
- [j24]Damla Ovek
SARS-CoV-2 Interactome 3D: A Web interface for 3D visualization and analysis of SARS-CoV-2-human mimicry and interactions. Bioinform. 38(5): 1455-1457 (2022) - [j23]Hansaim Lim
HMI-PRED 2.0: a biologist-oriented web application for prediction of host-microbe protein-protein interaction by interface mimicry. Bioinform. 38(21): 4962-4965 (2022) - 2021
- [d10]Laxmikant V. Kalé
UIUC-PPL/charm: v7.0.0-rc1. Version v7.0.0-rc1. Zenodo, 2021 [all versions] - [d9]Laxmikant V. Kalé
UIUC-PPL/charm: v7.0.0-rc2. Version v7.0.0-rc2. Zenodo, 2021 [all versions] - [d8]Laxmikant V. Kalé
UIUC-PPL/charm: Charm++ version 7.0.0. Version v7.0.0. Zenodo, 2021 [all versions] - 2020
- [j22]Jackson Weako, Abdullahi Ibrahim Uba
Identification of potential inhibitors of human methionine aminopeptidase (type II) for cancer therapy: Structure-based virtual screening, ADMET prediction and molecular dynamics studies. Comput. Biol. Chem. 86: 107244 (2020) - [c15]Waris Gill, Öznur Özkasap, Attila Gürsoy:
Intelligent Edge Computing: State-of-the-art Techniques and Applications. SIU 2020: 1-4 - [p3]Farideh Halakou, Attila Gürsoy, Ozlem Keskin
Embedding Alternative Conformations of Proteins in Protein-Protein Interaction Networks. Protein-Protein Interaction Networks 2020: 113-124 - [d7]Laxmikant V. Kalé
UIUC-PPL/charm: v6.10.0. Version v6.10.0. Zenodo, 2020 [all versions] - [d6]Laxmikant V. Kalé
UIUC-PPL/charm: v6.10.1. Version v6.10.1. Zenodo, 2020 [all versions] - [d5]Laxmikant V. Kalé
UIUC-PPL/charm: Charm++ version 6.10.2. Version v6.10.2. Zenodo, 2020 [all versions] - [d4]Laxmikant V. Kalé
UIUC-PPL/charm: v6.11.0-beta1. Version v6.11.0-beta1. Zenodo, 2020 [all versions]
2010 – 2019
- 2019
- [j21]Cansu Dincer
3D spatial organization and network-guided comparison of mutation profiles in Glioblastoma reveals similarities across patients. PLoS Comput. Biol. 15(9) (2019) - [d3]Laxmikant V. Kalé
UIUC-PPL/charm: v6.10.0-beta1. Version v6.10.0-beta1. Zenodo, 2019 [all versions] - [d2]Laxmikant V. Kalé
UIUC-PPL/charm: v6.10.0-rc. Version v6.10.0-rc. Zenodo, 2019 [all versions] - [d1]Laxmikant V. Kalé
UIUC-PPL/charm: v6.10.0-rc2. Version v6.10.0-rc2. Zenodo, 2019 [all versions] - 2018
- [j20]E. Sila Ozdemir
Analysis of single amino acid variations in singlet hot spots of protein-protein interfaces. Bioinform. 34(17): i795-i801 (2018) - 2017
- [c14]Farideh Halakou, Attila Gürsoy, Emel Sen Kilic
Topological, functional, and structural analyses of protein-protein interaction networks of breast cancer lung and brain metastases. CIBCB 2017: 1-7 - 2014
- [j19]Alper Baspinar, Engin Cukuroglu, Ruth Nussinov
PRISM: a web server and repository for prediction of protein-protein interactions and modeling their 3D complexes. Nucleic Acids Res. 42(Webserver-Issue): 285-289 (2014) - [j18]Saliha Ece Acuner Ozbabacan
The Structural Pathway of Interleukin 1 (IL-1) Initiated Signaling Reveals Mechanisms of Oncogenic Mutations and SNPs in Inflammation and Cancer. PLoS Comput. Biol. 10(2) (2014) - [c13]Deniz Demircioglu
Modeling Structural Protein Interaction Networks for Betweenness Analysis. ISCIS 2014: 367-376 - 2012
- [j17]Billur Engin, Ozlem Keskin
A Strategy Based on Protein-Protein Interface Motifs May Help in Identifying Drug Off-Targets. J. Chem. Inf. Model. 52(8): 2273-2286 (2012) - [j16]Engin Cukuroglu, Attila Gürsoy
HotRegion: a database of predicted hot spot clusters. Nucleic Acids Res. 40(Database-Issue): 829-833 (2012) - 2010
- [j15]Sibel Kalyoncu
Interaction prediction and classification of PDZ domains. BMC Bioinform. 11: 357 (2010) - [j14]Nurcan Tuncbag
HotPoint: hot spot prediction server for protein interfaces. Nucleic Acids Res. 38(Web-Server-Issue): 402-406 (2010)
2000 – 2009
- 2009
- [j13]Nurcan Tuncbag
A survey of available tools and web servers for analysis of protein-protein interactions and interfaces. Briefings Bioinform. 10(3): 217-232 (2009) - [j12]Nurcan Tuncbag
Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy. Bioinform. 25(12): 1513-1520 (2009) - [j11]Gozde Kar, Attila Gürsoy
Human Cancer Protein-Protein Interaction Network: A Structural Perspective. PLoS Comput. Biol. 5(12) (2009) - 2008
- [j10]Emre Guney
HotSprint: database of computational hot spots in protein interfaces. Nucleic Acids Res. 36(Database-Issue): 662-666 (2008) - [p2]Ozlem Keskin, Attila Gürsoy, Ruth Nussinov:
Principles of Protein Recognition and Properties of Protein-protein Interfaces. Protein-protein Interactions and Networks 2008: 53-65 - 2007
- [j9]Omer Ozan Sonmez, Attila Gürsoy:
A Novel Economic-Based Scheduling Heuristic for Computational Grids. Int. J. High Perform. Comput. Appl. 21(1): 21-29 (2007) - 2006
- [c12]Osman N. Yogurtçu
Extracting Gene Regulation Information from Microarray Time-Series Data Using Hidden Markov Models. ISCIS 2006: 144-153 - 2005
- [j8]A. Selim Aytuna, Attila Gürsoy
Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces. Bioinform. 21(12): 2850-2855 (2005) - [j7]Utkan Ogmen, Ozlem Keskin
PRISM: protein interactions by structural matching. Nucleic Acids Res. 33(Web-Server-Issue): 331-336 (2005) - [j6]Ali Kemal Sinop, Tolga Abaci, Ümit Akkus, Attila Gürsoy, Ugur Güdükbay
PHR: A Parallel Hierarchical Radiosity System with Dynamic Load Balancing. J. Supercomput. 31(3): 249-263 (2005) - [c11]Omer Ozan Sonmez, Attila Gürsoy:
Comparison of Pricing Policies for a Computational Grid Market. PPAM 2005: 766-773 - 2004
- [j5]Emek Demir, Ozgun Babur
An ontology for collaborative construction and analysis of cellular pathways. Bioinform. 20(3): 349-356 (2004) - [j4]Ahmet Palazoglu, Attila Gürsoy
Folding Dynamics of Proteins from Denatured to Native State: Principal Component Analysis. J. Comput. Biol. 11(6): 1149-1168 (2004) - [j3]Attila Gürsoy, Laxmikant V. Kalé:
Performance and modularity benefits of message-driven execution. J. Parallel Distributed Comput. 64(4): 461-480 (2004) - 2003
- [c10]A. Kocatas, Attila Gürsoy, Rengül Çetin-Atalay
Application of Data Mining Techniques to Protein-Protein Interaction Prediction. ISCIS 2003: 316-323 - [c9]Attila Gürsoy:
Data Decomposition for Parallel K-means Clustering. PPAM 2003: 241-248 - 2002
- [j2]Emek Demir, Ozgun Babur
PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways. Bioinform. 18(7): 996-1003 (2002) - 2001
- [c8]Attila Gürsoy, Ilker Cengiz:
Parallel Pruning for K-Means Clustering on Shared Memory Architectures. Euro-Par 2001: 321-325 - 2000
- [c7]Attila Gürsoy, Murat Atun:
Neighbourhood Preserving Load Balancing: A Self-Organizing Approach. Euro-Par 2000: 234-241
1990 – 1999
- 1999
- [c6]R. Sireli, Attila Gürsoy:
Parallel Hierarchical Radiosity. PDPTA 1999: 1634-1640 - [c5]Attila Gürsoy, Ilker Cengiz:
Mechanisms for Programming SMP Clusters. PDPTA 1999: 1723-1729 - [p1]James C. Phillips, Robert Brunner, Aritomo Shinozaki, Milind A. Bhandarkar, Neal Krawetz, Attila Gürsoy, Laxmikant V. Kalé, Robert D. Skeel, Klaus Schulten:
Avoiding Algorithmic Obfuscation in a Message-Driven Parallel MD Code. Computational Molecular Dynamics 1999: 472-482 - 1996
- [j1]Mark T. Nelson, William Humphrey, Attila Gürsoy, Andrew Dalke, Laxmikant V. Kalé, Robert D. Skeel, Klaus Schulten:
NAMD: a Parallel, Object-Oriented Molecular Dynamics Program. Int. J. High Perform. Comput. Appl. 10(4): 251-268 (1996) - [c4]Attila Gürsoy, Laxmikant V. Kalé:
Simulating Message-Driven Programs. ICPP, Vol. 3 1996: 223-230 - 1995
- [c3]Laxmikant V. Kalé, Attila Gürsoy:
Modularity, Reuse and Efficiency with Message-Driven Libraries. PP 1995: 738-743 - 1994
- [c2]Attila Gürsoy, Laxmikant V. Kalé:
Dagger: Combining Benefits of Synchronous and Asynchronous Communication Styles. IPPS 1994: 590-596 - 1991
- [c1]Attila Gürsoy, Laxmikant V. Kalé:
High level support for divide-and-conquer parallelism. SC 1991: 283-292
Coauthor Index
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last updated on 2024-10-07 22:13 CEST by the dblp team
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