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Radhakrishnan Mahadevan
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2020 – today
- 2023
- [j17]Rafael D. de Oliveira
, Galo A. C. Le Roux
Nonlinear programming reformulation of dynamic flux balance analysis models. Comput. Chem. Eng. 170: 108101 (2023) - 2022
- [j16]Kiandokht Haddadi, Rana Ahmed Barghout
KinMod database: a tool for investigating metabolic regulation. Database J. Biol. Databases Curation 2022(2022) (2022) - 2021
- [j15]Leo Zhu
Physiologically-based pharmacokinetic model for predicting blood and tissue tetrahydrocannabinol concentrations. Comput. Chem. Eng. 154: 107461 (2021) - [j14]Leo Zhu
Integration of a physiologically-based pharmacokinetic model with a whole-body, organ-resolved genome-scale model for characterization of ethanol and acetaldehyde metabolism. PLoS Comput. Biol. 17(8) (2021) - [j13]Dafni Giannari
A gap-filling algorithm for prediction of metabolic interactions in microbial communities. PLoS Comput. Biol. 17(11) (2021) - [c6]Zhiqing Xu, Jinghao Wu, Yun S. Song, Radhakrishnan Mahadevan:
Enzyme Activity Prediction of Sequence Variants on Novel Substrates using Improved Substrate Encodings and Convolutional Pooling. MLBC 2021: 78-87 - 2020
- [j12]Steffen Klamt
Speeding up the core algorithm for the dual calculation of minimal cut sets in large metabolic networks. BMC Bioinform. 21(1): 510 (2020)
2010 – 2019
- 2019
- [j11]Kevin Correia
AYbRAH: a curated ortholog database for yeasts and fungi spanning 600 million years of evolution. Database J. Biol. Databases Curation 2019: baz022 (2019) - [j10]Shyam Srinivasan, William R. Cluett, Radhakrishnan Mahadevan
A scalable method for parameter identification in kinetic models of metabolism using steady-state data. Bioinform. 35(24): 5216-5225 (2019) - [j9]Masood Khaksar Toroghi, William R. Cluett, Radhakrishnan Mahadevan
A multi-scale model for low-density lipoprotein cholesterol (LDL-C) regulation in the human body: Application to quantitative systems pharmacology. Comput. Chem. Eng. 130 (2019) - 2018
- [j8]Shyam Srinivasan, William R. Cluett, Radhakrishnan Mahadevan
Model-based design of bistable cell factories for metabolic engineering. Bioinform. 34(8): 1363-1371 (2018) - 2017
- [j7]Steffen Klamt
From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints. PLoS Comput. Biol. 13(4) (2017) - 2015
- [j6]Radhakrishnan Mahadevan
Genome-scale strain designs based on regulatory minimal cut sets. Bioinform. 31(17): 2844-2851 (2015) - 2010
- [j5]M. Ahsanul Islam
Characterizing the Metabolism of Dehalococcoides with a Constraint-Based Model. PLoS Comput. Biol. 6(8) (2010) - [c5]Laurence Yang, Radhakrishnan Mahadevan
Designing experiments from noisy metabolomics data to refine constraint-based models. ACC 2010: 5143-5148
2000 – 2009
- 2009
- [j4]Jun Sun, Bahareh Sayyar, Jessica E. Butler
Genome-scale constraint-based modeling of Geobacter metallireducens. BMC Syst. Biol. 3: 15 (2009) - 2008
- [j3]Laurence Yang, Radhakrishnan Mahadevan
A bilevel optimization algorithm to identify enzymatic capacity constraints in metabolic networks. Comput. Chem. Eng. 32(9): 2072-2085 (2008) - [j2]Daniel Segura
Computational and Experimental Analysis of Redundancy in the Central Metabolism of Geobacter sulfurreducens. PLoS Comput. Biol. 4(2) (2008) - [c4]Julia Krushkal, Marko Puljic, Bin Yan, Jose F. Barbe, Radhakrishnan Mahadevan
Genome Regions Involved in Multiple Regulatory Pathways Identified Using GSEL, A Genome-Wide Database of Regulatory Sequence Elements of Geobacter sulfurreducens. BMEI (1) 2008: 424-431 - 2006
- [j1]Kapil G. Gadkar, Radhakrishnan Mahadevan
Optimal genetic manipulations in batch bioreactor control. Autom. 42(10): 1723-1733 (2006) - 2005
- [c3]Kapil G. Gadkar, Radhakrishnan Mahadevan, Francis J. Doyle III:
Batch control of genetic alterations for optimal metabolic engineering. ACC 2005: 3108-3114 - 2004
- [c2]Radhakrishnan Mahadevan, Francis J. Doyle:
A partial flatness approach to nonlinear moving horizon estimation. ACC 2004: 211-215
1990 – 1999
- 1999
- [c1]Radhakrishnan Mahadevan
Nonlinear nonsquare control of a continuous bioreactor using flat outputs. ECC 1999: 3757-3762
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