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Hao Sun 0001

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affiliation: The Chinese University of Hong Kong
affiliation (former): Ohio State University, Columbus, OH, USA

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2020 – today

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2024
[j17]
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Xing Zhao, Zigui Chen, Huating Wang, Hao Sun:
Occlusion enhanced pan-cancer classification via deep learning. BMC Bioinform. 25(1): 260 (2024)
2023
[c5]
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  - conf/icbbs/ZhaoW023
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Xing Zhao, Huating Wang, Hao Sun:
GENESO: A Framework for Pan-Cancer Classification and Marker Gene Discovery by Symmetrical Occlusion Method Using Deep Learning. ICBBS 2023: 7-16
2021
[j16]
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Kun Sun, Huating Wang, Hao Sun:
NAMS webserver: coding potential assessment and functional annotation of plant transcripts. Briefings Bioinform. 22(3) (2021)
[j15]
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Yile Huang, Yulong Qiao, Yu Zhao, Yuying Li, Jie Yuan, Jiajian Zhou, Hao Sun, Huating Wang:
Large scale RNA-binding proteins/LncRNAs interaction analysis to uncover lncRNA nuclear localization mechanisms. Briefings Bioinform. 22(6) (2021)
2020
[j14]
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  - journals/patterns/SunLMZDWS20
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Kun Sun, Lishi Li, Li Ma, Yu Zhao, Lin Deng, Huating Wang, Hao Sun:
Msuite: A High-Performance and Versatile DNA Methylation Data-Analysis Toolkit. Patterns 1(8): 100127 (2020)
[c4]
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Yile Huang, Yulong Qiao, Yu Zhao, Yingzhe Ding, Jie Yuan, Jiajian Zhou, Huating Wang, Hao Sun:
RNA binding proteins (RBPs) regulate lncRNA nuclear retention. BIBM 2020: 2918-2919

2010 – 2019

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2019
[j13]
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  - journals/bioinformatics/YuanZWS19
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Jie Yuan, Jiajian Zhou, Huating Wang, Hao Sun:
SKmDB: an integrated database of next generation sequencing information in skeletal muscle. Bioinform. 35(5): 847-855 (2019)
2018
[j12]
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  - journals/bioinformatics/ZhouHDYWS18
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Jiajian Zhou, Yile Huang, Yingzhe Ding, Jie Yuan, Huating Wang, Hao Sun:
lncFunTK: a toolkit for functional annotation of long noncoding RNAs. Bioinform. 34(19): 3415-3416 (2018)
[j11]
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Kun Sun, Jiguang Wang, Huating Wang, Hao Sun:
GeneCT: a generalizable cancerous status and tissue origin classifier for pan-cancer biopsies. Bioinform. 34(23): 4129-4130 (2018)
2017
[j10]
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Kun Sun, Fiona F. M. Lun, Peiyong Jiang, Hao Sun:
BSviewer: a genotype-preserving, nucleotide-level visualizer for bisulfite sequencing data. Bioinform. 33(21): 3495-3496 (2017)
2014
[c3]
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  - conf/bigcomp/SunYWS14
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Kun Sun, Yuet-Ping Yuen, Huating Wang, Hao Sun:
The Online Diagnosis System for sanger sequencing based genetic testing. BigComp 2014: 47-51
2013
[j9]
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  - journals/biodb/GuoSSWS13
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Andy M. Guo, Kun Sun, Xiaoxi Su, Huating Wang, Hao Sun:
YY1TargetDB: an integral information resource for Yin Yang 1 target loci. Database J. Biol. Databases Curation 2013 (2013)
[j8]
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Xiaofeng Song, Minghao Wang, Yi-Ping Phoebe Chen, Huating Wang, Ping Han, Hao Sun:
Prediction of pre-miRNA with multiple stem-loops using pruning algorithm. Comput. Biol. Medicine 43(5): 409-416 (2013)
2012
[j7]
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  - journals/bioinformatics/JiangCLZLCLS12
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Peiyong Jiang, K. C. Allen Chan, Gary J. W. Liao, Yama W. L. Zheng, Tak Y. Leung, Rossa W. K. Chiu, Yuk Ming Dennis Lo, Hao Sun:
FetalQuant: deducing fractional fetal DNA concentration from massively parallel sequencing of DNA in maternal plasma. Bioinform. 28(22): 2883-2890 (2012)
2011
[j6]
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  - journals/nar/SunWWPGBASHD11
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Hao Sun, Jiejun Wu, Priyankara Wikramasinghe, Sharmistha Pal, Ravi Gupta, Anirban Bhattacharyya, Francisco J. Agosto-Perez, Louise C. Showe, Tim Hui-Ming Huang, Ramana V. Davuluri:
Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq. Nucleic Acids Res. 39(1): 190-201 (2011)
[c2]
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Leina Lu, Liang Zhou, Eric Z. Chen, Kun Sun, Peiyong Jiang, Susie Su, Lijun Wang, Hao Sun, Huating Wang:
Genome-wide identification of TF-miRNA regulatory networks in myogenesis. BIBM Workshops 2011: 941
2010
[c1]
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Peiyong Jiang, Xiaoxi Sun, Eric Z. Chen, Kun Sun, Rossa W. K. Chiu, Yuk Ming Dennis Lo, Hao Sun:
Methy-Pipe: An integrated bioinformatics data analysis pipeline for whole genome methylome analysis. BIBM Workshops 2010: 585-590

2000 – 2009

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2006
[j5]
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Hao Sun, Saranyan K. Palaniswamy, Twyla T. Pohar, Victor X. Jin, Tim Hui-Ming Huang, Ramana V. Davuluri:
MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data. Nucleic Acids Res. 34(Database-Issue): 98-103 (2006)
2005
[j4]
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Saranyan K. Palaniswamy, Victor X. Jin, Hao Sun, Ramana V. Davuluri:
OMGProm: a database of orthologous mammalian gene promoters. Bioinform. 21(6): 835-836 (2005)
2004
[j3]
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  - journals/bioinformatics/SunD04
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Hao Sun, Ramana V. Davuluri:
Java-based application framework for visualization of gene regulatory region annotations. Bioinform. 20(5): 727-734 (2004)
[j2]
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  - journals/nar/PoharSD04
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Twyla T. Pohar, Hao Sun, Ramana V. Davuluri:
HemoPDB: Hematopoiesis Promoter Database, an information resource of transcriptional regulation in blood cell development. Nucleic Acids Res. 32(Database-Issue): 86-90 (2004)
2003
[j1]
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  - journals/bmcbi/DavuluriSPMMKG03
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Ramana V. Davuluri, Hao Sun, Saranyan K. Palaniswamy, Nicole Matthews, Carlos Molina, Mike Kurtz, Erich Grotewold:
AGRIS: Arabidopsis Gene Regulatory Information Server, an information resource of Arabidopsis cis-regulatory elements and transcription factors. BMC Bioinform. 4: 25 (2003)

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