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Alexander Lachmann
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2020 – today
- 2024
- [j26]Giacomo B. Marino, Daniel J. B. Clarke, Alexander Lachmann, Eden Z. Deng, Avi Ma'ayan:
RummaGEO: Automatic mining of human and mouse gene sets from GEO. Patterns 5(10): 101072 (2024) - 2023
- [j25]Giacomo B. Marino
, Megan L. Wojciechowicz, Daniel J. B. Clarke
lncHUB2: aggregated and inferred knowledge about human and mouse lncRNAs. Database J. Biol. Databases Curation 2023 (2023) - 2022
- [j24]Alexander Lachmann
blitzGSEA: efficient computation of gene set enrichment analysis through gamma distribution approximation. Bioinform. 38(8): 2356-2357 (2022) - [j23]Eryk Kropiwnicki, Alexander Lachmann, Daniel J. B. Clarke
DrugShot: querying biomedical search terms to retrieve prioritized lists of small molecules. BMC Bioinform. 23(1): 76 (2022) - [j22]John Erol Evangelista
SigCom LINCS: data and metadata search engine for a million gene expression signatures. Nucleic Acids Res. 50(W1): 697-709 (2022) - 2021
- [j21]Eryk Kropiwnicki, John Erol Evangelista
Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning. Database J. Biol. Databases Curation 2021 (2021) - [j20]Maxim V. Kuleshov, Zhuorui Xie, Alexandra B. K. London, Janice Yang
KEA3: improved kinase enrichment analysis via data integration. Nucleic Acids Res. 49(Webserver-Issue): 304-316 (2021) - [j19]Daniel J. B. Clarke
Appyters: Turning Jupyter Notebooks into data-driven web apps. Patterns 2(3): 100213 (2021) - 2020
- [j18]Alon Bartal, Alexander Lachmann, Daniel J. B. Clarke
EnrichrBot: Twitter bot tracking tweets about human genes. Bioinform. 36(12): 3932-3934 (2020) - [j17]Vasileios Stathias, John Paul Turner, Amar Koleti, Dusica Vidovic, Daniel J. Cooper, Mehdi Fazel-Najafabadi, Marcin Pilarczyk, Raymond Terryn, Caty Chung, Afoma Umeano, Daniel J. B. Clarke
LINCS Data Portal 2.0: next generation access point for perturbation-response signatures. Nucleic Acids Res. 48(Database-Issue): D431-D439 (2020) - [j16]Maxim V. Kuleshov
The COVID-19 Drug and Gene Set Library. Patterns 1(6): 100090 (2020)
2010 – 2019
- 2019
- [j15]Maxim V. Kuleshov
modEnrichr: a suite of gene set enrichment analysis tools for model organisms. Nucleic Acids Res. 47(Webserver-Issue): W183-W190 (2019) - [j14]Alexandra B. Keenan, Denis Torre
ChEA3: transcription factor enrichment analysis by orthogonal omics integration. Nucleic Acids Res. 47(Webserver-Issue): W212-W224 (2019) - [j13]Alexander Lachmann, Brian M. Schilder, Megan L. Wojciechowicz, Denis Torre
Geneshot: search engine for ranking genes from arbitrary text queries. Nucleic Acids Res. 47(Webserver-Issue): W571-W577 (2019) - 2018
- [j12]Zichen Wang
L1000FWD: fireworks visualization of drug-induced transcriptomic signatures. Bioinform. 34(12): 2150-2152 (2018) - [j11]Daniel J. B. Clarke
eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks. Nucleic Acids Res. 46(Webserver-Issue): W171-W179 (2018) - 2017
- [j10]Yao Shen, Mariano J. Alvarez, Brygida C. Bisikirska, Alexander Lachmann, Ronald Realubit
Systematic, network-based characterization of therapeutic target inhibitors. PLoS Comput. Biol. 13(10) (2017) - 2016
- [j9]Alexander Lachmann, Federico M. Giorgi
Detection and removal of spatial bias in multiwell assays. Bioinform. 32(13): 1959-1965 (2016) - [j8]Alexander Lachmann, Federico M. Giorgi
ARACNe-AP: gene network reverse engineering through adaptive partitioning inference of mutual information. Bioinform. 32(14): 2233-2235 (2016) - [j7]Maxim V. Kuleshov
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update. Nucleic Acids Res. 44(Webserver-Issue): W90-W97 (2016) - 2011
- [j6]Ruth Dannenfelser
FNV: light-weight flash-based network and pathway viewer. Bioinform. 27(8): 1181-1182 (2011) - 2010
- [j5]Ben D. MacArthur
GATE: software for the analysis and visualization of high-dimensional time series expression data. Bioinform. 26(1): 143-144 (2010) - [j4]Alexander Lachmann, Huilei Xu, Jayanth Krishnan, Seth I. Berger
ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments. Bioinform. 26(19): 2438-2444 (2010) - [j3]Alexander Lachmann, Avi Ma'ayan
Lists2Networks: Integrated analysis of gene/protein lists. BMC Bioinform. 11: 87 (2010) - [c1]Marylens Hernandez, Alexander Lachmann, Shan Zhao, Kunhong Xiao, Avi Ma'ayan
Inferring the Sign of Kinase-Substrate Interactions by Combining Quantitative Phosphoproteomics with a Literature-Based Mammalian Kinome Network. BIBE 2010: 180-184
2000 – 2009
- 2009
- [j2]Alexander Lachmann, Avi Ma'ayan
KEA: kinase enrichment analysis. Bioinform. 25(5): 684-686 (2009) - 2008
- [j1]Alexander Lachmann, Mirek Riedewald:
Finding relevant patterns in bursty sequences. Proc. VLDB Endow. 1(1): 78-89 (2008)
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last updated on 2024-10-18 20:29 CEST by the dblp team
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