default search action
T. M. Murali 0001
Person information
- affiliation: Virginia Tech, Blacksburg, VA, USA
- affiliation (2001 - 2003): Boston University, MA, USA
- affiliation (1999 - 2001): Compaq's Cambridge Research Lab, MA, USA
- affiliation (until 1999): Stanford University, CA, USA
- affiliation (former): Brown University, Provicence, RI, USA
- affiliation (former): Duke University, Durham, NC, USA
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2022
- [j30]Aditya Bharadwaj
, David Gwizdala, Yoonjin Kim, Kurt Luther, T. M. Murali:
Flud: A Hybrid Crowd-Algorithm Approach for Visualizing Biological Networks. ACM Trans. Comput. Hum. Interact. 29(1): 8:1-8:53 (2022) - 2021
- [j29]Jeffrey N. Law
Accurate and efficient gene function prediction using a multi-bacterial network. Bioinform. 37(6): 800-806 (2021) - [j28]Ion I. Mandoiu, T. M. Murali, Giri Narasimhan
Special Issue: 9th International Computational Advances in Bio and Medical Sciences (ICCABS 2019). J. Comput. Biol. 28(2): 115-116 (2021) - [c26]Meghana Kshirsagar, Nure Tasnina, Michael D. Ward, Jeffrey N. Law, T. M. Murali, Juan M. Lavista Ferres, Gregory R. Bowman, Judith Klein-Seetharaman:
Protein sequence models for prediction and comparative analysis of the SARS-CoV-2 - human interactome. PSB 2021 - 2020
- [c25]Aditya Pratapa, Amogh P. Jalihal, Jeffrey N. Law, Aditya Bharadwaj, T. M. Murali:
How to build regulatory networks from single-cell gene expression data. BCB 2020: 11:1 - [e1]Ion I. Mandoiu
Computational Advances in Bio and Medical Sciences - 9th International Conference, ICCABS 2019, Miami, FL, USA, November 15-17, 2019, Revised Selected Papers. Lecture Notes in Computer Science 12029, Springer 2020, ISBN 978-3-030-46164-5 [contents]
2010 – 2019
- 2019
- [j27]Mitchell J. Wagner, Aditya Pratapa
Reconstructing signaling pathways using regular language constrained paths. Bioinform. 35(14): i624-i633 (2019) - [j26]Nicholas Franzese
Hypergraph-based connectivity measures for signaling pathway topologies. PLoS Comput. Biol. 15(10) (2019) - [i3]Aditya Bharadwaj, David Gwizdala, Yoonjin Kim, Kurt Luther, T. M. Murali:
Flud: a hybrid crowd-algorithm approach for visualizing biological networks. CoRR abs/1908.07471 (2019) - 2018
- [j25]Aditya Pratapa
CrossPlan: systematic planning of genetic crosses to validate mathematical models. Bioinform. 34(13): 2237-2244 (2018) - [j24]T. M. Murali
Guest Editorial. IEEE ACM Trans. Comput. Biol. Bioinform. 15(4): 1036 (2018) - [c24]Aditya Pratapa
Efficient Synthesis of Mutants Using Genetic Crosses. BCB 2018: 53-62 - [c23]Aditya Pratapa, Neil Adames, Pavel K. Kraikivski, Nicholas Franzese, John J. Tyson, Jean Peccoud
CrossPlan: Systematic Planning of Genetic Crosses to Validate Mathematical Models. BCB 2018: 567 - [c22]Divit P. Singh, Lee Lisle, T. M. Murali, Kurt Luther
CrowdLayout: Crowdsourced Design and Evaluation of Biological Network Visualizations. CHI 2018: 232 - [i2]Li Jun Huang, Jeffrey N. Law
Automating the PathLinker app for Cytoscape. F1000Research 7: 727 (2018) - [i1]Linhua Wang
Large-scale protein function prediction using heterogeneous ensembles. F1000Research 7: 1577 (2018) - 2017
- [j23]Aditya Bharadwaj, Divit P. Singh, Anna M. Ritz
GraphSpace: stimulating interdisciplinary collaborations in network biology. Bioinform. 33(19): 3134-3136 (2017) - [j22]Sarah A. Sam, Joelle Teel, Allison N. Tegge, Aditya Bharadwaj, T. M. Murali:
XTalkDB: a database of signaling pathway crosstalk. Nucleic Acids Res. 45(Database-Issue): D432-D439 (2017) - [j21]Anna M. Ritz
Pathway Analysis with Signaling Hypergraphs. IEEE ACM Trans. Comput. Biol. Bioinform. 14(5): 1042-1055 (2017) - 2016
- [j20]Allison N. Tegge, Nicholas Sharp, T. M. Murali:
Xtalk: a path-based approach for identifying crosstalk between signaling pathways. Bioinform. 32(2): 242-251 (2016) - [c21]Ahsanur Rahman, Steve T. K. Jan, Hyunju Kim, B. Aditya Prakash, T. M. Murali:
Unstable Communities in Network Ensembles. SDM 2016: 504-512 - 2015
- [c20]Ahsanur Rahman
Mining Unstable Communities from Network Ensembles. ICDM Workshops 2015: 508-515 - 2014
- [c19]Anna M. Ritz, T. M. Murali:
Pathway analysis with signaling hypergraphs. BCB 2014: 249-258 - [c18]Craig Estep, Jaeil Yi, Anna M. Ritz, T. M. Murali:
GraphSpace: sharing and collaborating through networks on the web. BCB 2014: 631-632 - 2013
- [j19]Christopher L. Poirel, Ahsanur Rahman
Reconciling differential gene expression data with molecular interaction networks. Bioinform. 29(5): 622-629 (2013) - [j18]Christopher D. Lasher, Padmavathy Rajagopalan, T. M. Murali:
Summarizing cellular responses as biological process networks. BMC Syst. Biol. 7: 68 (2013) - [j17]Christopher L. Poirel, Richard R. Rodrigues, Katherine C. Chen, John J. Tyson
Top-Down Network Analysis to Drive Bottom-Up Modeling of Physiological Processes. J. Comput. Biol. 20(5): 409-418 (2013) - [j16]Ahsanur Rahman
Reverse Engineering Molecular Hypergraphs. IEEE ACM Trans. Comput. Biol. Bioinform. 10(5): 1113-1124 (2013) - 2012
- [j15]Corban G. Rivera, Brett M. Tyler, T. M. Murali:
Sensitive detection of pathway perturbations in cancers. BMC Bioinform. 13(S-3): S9 (2012) - [j14]T. M. Murali:
Guest Editor's Introduction: Computationally Driven Experimental Biology. Computer 45(3): 22-23 (2012) - [c17]Ahsanur Rahman
Reverse engineering molecular hypergraphs. BCB 2012: 68-75 - [c16]T. M. Murali, Matthew D. Dyer, David Badger, Brett M. Tyler, Michael G. Katze:
Network-Based Prediction and Analysis of HIV Dependency Factors. RECOMB 2012: 183 - 2011
- [j13]Christopher L. Poirel, Clifford Conley Owens III, T. M. Murali:
Network-based functional enrichment. BMC Bioinform. 12(S-13): S14 (2011) - [j12]T. M. Murali, Matthew D. Dyer, David Badger, Brett M. Tyler, Michael G. Katze:
Network-Based Prediction and Analysis of HIV Dependency Factors. PLoS Comput. Biol. 7(9) (2011) - [c15]Corban G. Rivera, Brett M. Tyler, T. M. Murali:
Sensitive detection of pathway perturbations in cancers: extended abstract. BCB 2011: 59-68
2000 – 2009
- 2009
- [j11]Tim Driscoll
PIG - the pathogen interaction gateway. Nucleic Acids Res. 37(Database-Issue): 647-650 (2009) - [c14]Corban G. Rivera, T. M. Murali:
Identifying Evolutionarily Conserved Protein Interaction Modules Using GraphHopper. BICoB 2009: 67-78 - [c13]Clifford Conley Owens III, T. M. Murali, Naren Ramakrishnan
Capturing truthiness: mining truth tables in binary datasets. SAC 2009: 1467-1474 - 2008
- [j10]T. M. Murali, Corban G. Rivera:
Network Legos: Building Blocks of Cellular Wiring Diagrams. J. Comput. Biol. 15(7): 829-844 (2008) - [j9]Ying Jin, T. M. Murali, Naren Ramakrishnan
Compositional mining of multirelational biological datasets. ACM Trans. Knowl. Discov. Data 2(1): 2:1-2:35 (2008) - 2007
- [c12]Matthew D. Dyer, T. M. Murali, Bruno W. S. Sobral
Computational prediction of host-pathogen protein-protein interactions. ISMB/ECCB (Supplement of Bioinformatics) 2007: 159-166 - [c11]T. M. Murali, Corban G. Rivera:
Network Legos: Building Blocks of Cellular Wiring Diagrams. RECOMB 2007: 47-61 - 2006
- [j8]Gregory A. Grothaus, Adeel Mufti, T. M. Murali:
Automatic layout and visualization of biclusters. Algorithms Mol. Biol. 1 (2006) - [j7]Amrita Pati, Cecilia Vasquez-Robinet
XcisClique: analysis of regulatory bicliques. BMC Bioinform. 7: 218 (2006) - [j6]Naveed Massjouni, Corban G. Rivera, T. M. Murali:
VIRGO: computational prediction of gene functions. Nucleic Acids Res. 34(Web-Server-Issue): 340-344 (2006) - 2003
- [j5]Yang Su, T. M. Murali, Vladimir Pavlovic
RankGene: identification of diagnostic genes based on expression data. Bioinform. 19(12): 1578-1579 (2003) - [c10]T. M. Murali, Simon Kasif:
Extracting Conserved Gene Expression Motifs from Gene Expression Data. Pacific Symposium on Biocomputing 2003: 77-88 - 2002
- [j4]Alon Efrat
New Similarity Measures between Polylines with Applications to Morphing and Polygon Sweeping. Discret. Comput. Geom. 28(4): 535-569 (2002) - [c9]Cecilia Magdalena Procopiuc, Michael Jones, Pankaj K. Agarwal, T. M. Murali:
A Monte Carlo algorithm for fast projective clustering. SIGMOD Conference 2002: 418-427 - 2001
- [c8]Alon Efrat, Sariel Har-Peled
Morphing between polylines. SODA 2001: 680-689 - 2000
- [j3]Pankaj K. Agarwal, Leonidas J. Guibas, T. M. Murali, Jeffrey Scott Vitter
Cylindrical static and kinetic binary space partitions. Comput. Geom. 16(2): 103-127 (2000) - [j2]Pankaj K. Agarwal, Edward F. Grove, T. M. Murali, Jeffrey Scott Vitter
Binary Space Partitions for Fat Rectangles. SIAM J. Comput. 29(5): 1422-1448 (2000) - [c7]Alon Efrat, Leonidas J. Guibas, Sariel Har-Peled
Sweeping simple polygons with a chain of guards. SODA 2000: 927-936
1990 – 1999
- 1999
- [b1]T. M. Murali:
Efficient Hidden-Surface Removal in Theory and Practice. Brown University, USA, 1999 - [j1]Edward F. Grove, T. M. Murali, Jeffrey Scott Vitter
The Object Complexity Model for Hidden-Surface Removal. Int. J. Comput. Geom. Appl. 9(2): 207-217 (1999) - 1998
- [c6]T. M. Murali, Pankaj K. Agarwal, Jeffrey Scott Vitter
Constructing Binary Space Partitions for Orthogonal Rectabgles in Practice. ESA 1998: 211-222 - [c5]Pankaj K. Agarwal, Lars Arge, T. M. Murali, Kasturi R. Varadarajan, Jeffrey Scott Vitter:
I/O-Efficient Algorithms for Contour-line Extraction and Planar Graph Blocking (Extended Abstract). SODA 1998: 117-126 - 1997
- [c4]Pankaj K. Agarwal, Leonidas J. Guibas, T. M. Murali, Jeffrey Scott Vitter
Cylindrical Static and Kinetic Binary Space Partitions. SCG 1997: 39-48 - [c3]Pankaj K. Agarwal, T. M. Murali, Jeffrey Scott Vitter
Practical Techniques for Constructing Binary Space Partitions for Orthogonal Rectangles. SCG 1997: 382-384 - [c2]T. M. Murali, Thomas A. Funkhouser:
Consistent Solid and Boundary Representations from Arbitrary Polygonal Data. SI3D 1997: 155-162, 196 - 1996
- [c1]Pankaj K. Agarwal, Edward F. Grove, T. M. Murali, Jeffrey Scott Vitter:
Binary Search Partitions for Fat Rectangles. FOCS 1996: 482-491
Coauthor Index
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from ,
, and
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and
to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from .
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-10-07 22:10 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by: