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Chiara Romualdi
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2020 – today
- 2023
- [j28]Matteo Calgaro
, Chiara Romualdi
benchdamic: benchmarking of differential abundance methods for microbiome data. Bioinform. 39(1) (2023) - [j27]Tommaso Becchi, Luca Beltrame
A pan-cancer landscape of pathogenic somatic copy number variations. J. Biomed. Informatics 147: 104529 (2023) - 2022
- [j26]Giuseppe Cattaneo
The power of word-frequency-based alignment-free functions: a comprehensive large-scale experimental analysis. Bioinform. 38(4): 925-932 (2022) - 2021
- [j25]Matteo Borella, Graziano Martello, Davide Risso
PsiNorm: a scalable normalization for single-cell RNA-seq data. Bioinform. 38(1): 164-172 (2021) - [i1]Giuseppe Cattaneo, Umberto Ferraro Petrillo, Raffaele Giancarlo, Francesco Palini, Chiara Romualdi:
The Power of Alignment-Free Histogram-based Functions: a Comprehensive Genome Scale Experimental Analysis - Version 1. CoRR abs/2106.15531 (2021)
2010 – 2019
- 2019
- [j24]Gabriele Sales
metaGraphite-a new layer of pathway annotation to get metabolite networks. Bioinform. 35(7): 1258-1260 (2019) - [j23]Elisa Salviato
SourceSet: A graphical model approach to identify primary genes in perturbed biological pathways. PLoS Comput. Biol. 15(10) (2019) - 2018
- [c2]Vera Djordjilovic
Searching for the Source of Difference: A Graphical Model Approach. CIBB 2018: 131-138 - 2017
- [j22]Elisa Salviato
simPATHy: a new method for simulating data from perturbed biological PATHways. Bioinform. 33(3): 456-457 (2017) - [c1]Alessandro Palombit, Marco Castellaro
Cortical Thickness variability in Multiple Sclerosis: The role of lesion segmentation and filling. ISBI 2017: 792-795 - 2016
- [j21]Fabrizio Serra, Chiara Romualdi
Similarity Measures Based on the Overlap of Ranked Genes Are Effective for Comparison and Classification of Microarray Data. J. Comput. Biol. 23(7): 603-614 (2016) - [j20]Marco Moretto
COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses. Nucleic Acids Res. 44(Database-Issue): 620-623 (2016) - 2014
- [j19]Paolo G. V. Martini
timeClip: pathway analysis for time course data without replicates. BMC Bioinform. 15(S-5): S3 (2014) - 2013
- [j18]Gabriele Sales
Graphite Web: web tool for gene set analysis exploiting pathway topology. Nucleic Acids Res. 41(Webserver-Issue): 89-97 (2013) - 2012
- [j17]Gabriele Sales
graphite - a Bioconductor package to convert pathway topology to gene network. BMC Bioinform. 13: 20 (2012) - [j16]Andrea Bisognin
MAGIA2: from miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update). Nucleic Acids Res. 40(Web-Server-Issue): 13-21 (2012) - 2011
- [j15]Gabriele Sales
parmigene - a parallel R package for mutual information estimation and gene network reconstruction. Bioinform. 27(13): 1876-1877 (2011) - [j14]Luca Beltrame
The Biological Connection Markup Language: a SBGN-compliant format for visualization, filtering and analysis of biological pathways. Bioinform. 27(15): 2127-2133 (2011) - [j13]Paolo G. V. Martini
Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in individual and meta-analysis studies. BMC Bioinform. 12: 92 (2011) - 2010
- [j12]Maria Sofia Massa
Gene set analysis exploiting the topology of a pathway. BMC Syst. Biol. 4: 121 (2010) - [j11]Gabriele Sales
MAGIA, a web-based tool for miRNA and Genes Integrated Analysis. Nucleic Acids Res. 38(Web-Server-Issue): 352-359 (2010)
2000 – 2009
- 2009
- [j10]Davide Risso
A modified LOESS normalization applied to microRNA arrays: a comparative evaluation. Bioinform. 25(20): 2685-2691 (2009) - [j9]Andrea Bisognin
A-MADMAN: Annotation-based microarray data meta-analysis tool. BMC Bioinform. 10 (2009) - [j8]Monica Chiogna, Maria Sofia Massa
A comparison on effects of normalisations in the detection of differentially expressed genes. BMC Bioinform. 10 (2009) - 2008
- [j7]Massimiliano Calabrese
Morphology and evolution of cortical lesions in multiple sclerosis. A longitudinal MRI study. NeuroImage 42(4): 1324-1328 (2008) - 2007
- [j6]Nicola Vitulo
A global gene evolution analysis on Vibrionaceae family using phylogenetic profile. BMC Bioinform. 8(S-1) (2007) - 2005
- [j5]Davide Campagna, Chiara Romualdi
RAP: a new computer program for de novo identification of repeated sequences in whole genomes. Bioinform. 21(5): 582-588 (2005) - [j4]Chiara Romualdi
MIDAW: a web tool for statistical analysis of microarray data. Nucleic Acids Res. 33(Web-Server-Issue): 644-649 (2005) - 2003
- [j3]Stefano Toppo
TRAIT (TRAnscript Integrated Table): a knowledgebase of human skeletal muscle transcripts. Bioinform. 19(5): 661-662 (2003) - 2002
- [j2]Nicola Cannata, Stefano Toppo, Chiara Romualdi
Simplifying amino acid alphabets by means of a branch and bound algorithm and substitution matrices. Bioinform. 18(8): 1102-1108 (2002) - 2001
- [j1]Stefania Bortoluzzi
Differential expression of genes coding for ribosomal proteins in different human tissues. Bioinform. 17(12): 1152-1157 (2001)
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