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Edans Flavius de Oliveira Sandes
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2020 – today
- 2021
- [j13]Marco Antonio C. de Figueiredo, João Paulo Navarro
, Edans Flavius de Oliveira Sandes, George Teodoro, Alba C. M. A. Melo
Parallel Fine-Grained Comparison of Long DNA Sequences in Homogeneous and Heterogeneous GPU Platforms With Pruning. IEEE Trans. Parallel Distributed Syst. 32(12): 3053-3065 (2021) - 2020
- [j12]Edans F. de O. Sandes, George Luiz Medeiros Teodoro, Alba C. M. A. Melo
Bitmap filter: Speeding up exact set similarity joins with bitwise operations. Inf. Syst. 88 (2020) - [c11]Marco Antonio C. de Figueiredo, Edans Flavius de Oliveira Sandes, George Teodoro, Alba C. M. A. Melo
Parallel Comparison of Huge DNA Sequences in Multiple GPUs with Block Pruning. PDP 2020: 22-29
2010 – 2019
- 2019
- [j11]Marco Antonio C. de Figueiredo
MASA-OpenCL: Parallel pruned comparison of long DNA sequences with OpenCL. Concurr. Comput. Pract. Exp. 31(11) (2019) - [j10]Gabriel H. G. Silva, Edans F. de O. Sandes, George Teodoro, Alba C. M. A. Melo
Using Multiple Fickett Bands to Accelerate Biological Sequence Comparisons. J. Comput. Biol. 26(9): 908-922 (2019) - 2018
- [j9]Jesús Pérez Serrano, Edans F. de O. Sandes, Alba Cristina Magalhaes Alves de Melo
DNA sequences alignment in multi-GPUs: acceleration and energy payoff. BMC Bioinform. 19-S(14): 161-176 (2018) - [j8]Edans Flavius de Oliveira Sandes, George Luiz Medeiros Teodoro, Maria Emília M. T. Walter
Formalization of Block Pruning: Reducing the Number of Cells Computed in Exact Biological Sequence Comparison Algorithms. Comput. J. 61(5): 687-713 (2018) - 2017
- [c10]Gabriel H. G. Silva, Edans F. de O. Sandes, George Teodoro, Alba C. M. A. Melo
Parallel Biological Sequence Comparison in Linear Space with Multiple Adjustable Bands. AlCoB 2017: 167-179 - [c9]Jesús Pérez Serrano, Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo
Smith-Waterman Acceleration in Multi-GPUs: A Performance per Watt Analysis. IWBBIO (2) 2017: 512-523 - [i1]Edans F. de O. Sandes, George Teodoro, Alba C. M. A. Melo:
Bitmap Filter: Speeding up Exact Set Similarity Joins with Bitwise Operations. CoRR abs/1711.07295 (2017) - 2016
- [j7]Edans Flavius de Oliveira Sandes, Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo
Parallel Optimal Pairwise Biological Sequence Comparison: Algorithms, Platforms, and Classification. ACM Comput. Surv. 48(4): 63:1-63:36 (2016) - [j6]Edans Flavius de Oliveira Sandes, Guillermo Miranda, Xavier Martorell
MASA: A Multiplatform Architecture for Sequence Aligners with Block Pruning. ACM Trans. Parallel Comput. 2(4): 28:1-28:31 (2016) - [j5]Edans Flavius de Oliveira Sandes, Guillermo Miranda, Xavier Martorell
CUDAlign 4.0: Incremental Speculative Traceback for Exact Chromosome-Wide Alignment in GPU Clusters. IEEE Trans. Parallel Distributed Syst. 27(10): 2838-2850 (2016) - 2015
- [b1]Edans Flavius de Oliveira Sandes:
Algoritmos paralelos exatos e otimizações para alinhamento de sequências biológicas longas em plataformas de alto desempenho. University of Brasília, Brazil, 2015 - [c8]Marco Antonio C. de Figueiredo, Edans F. de O. Sandes, Alba Cristina Magalhaes Alves de Melo
Parallel Megabase DNA Sequence Comparison with OpenCL. HiPC 2015: 436-445 - 2014
- [j4]Edans Flavius de Oliveira Sandes, Célia Ghedini Ralha
An agent-based solution for dynamic multi-node wavefront balancing in biological sequence comparison. Expert Syst. Appl. 41(10): 4929-4938 (2014) - [j3]Li Weigang
Querying dynamic communities in online social networks. J. Zhejiang Univ. Sci. C 15(2): 81-90 (2014) - [c7]Edans F. de O. Sandes, Guillermo Miranda, Alba Cristina Magalhaes Alves de Melo
CUDAlign 3.0: Parallel Biological Sequence Comparison in Large GPU Clusters. CCGRID 2014: 160-169 - [c6]Edans F. de O. Sandes, Guillermo Miranda, Alba Cristina Magalhaes Alves de Melo
Fine-grain parallel megabase sequence comparison with multiple heterogeneous GPUs. PPoPP 2014: 383-384 - 2013
- [j2]Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo
Retrieving Smith-Waterman Alignments with Optimizations for Megabase Biological Sequences Using GPU. IEEE Trans. Parallel Distributed Syst. 24(5): 1009-1021 (2013) - [c5]Guilherme Menegói, Tainá Raiol
A Pipeline to Characterize Virulence Factors in Mycobacterium Massiliense Genome. BSB 2013: 202-213 - 2012
- [c4]Edans Flavius de Oliveira Sandes, Jacir Luiz Bordim, Alba Cristina Magalhaes Alves de Melo
Record Route Elimination (RRE): An Energy-Efficient Broadcast Algorithm. ICNC 2012: 247-253 - [c3]Edans Flavius de Oliveira Sandes, Li Weigang
Logical Model of Relationship for Online Social Networks and Performance Optimizing of Queries - WISE 2012 Challenge - T1: Performance Track Scalability Winner. WISE 2012: 726-736 - 2011
- [c2]Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo
Smith-Waterman Alignment of Huge Sequences with GPU in Linear Space. IPDPS 2011: 1199-1211 - 2010
- [c1]Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo
CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences. PPoPP 2010: 137-146
2000 – 2009
- 2007
- [j1]Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo
An exact parallel algorithm to compare very long biological sequences in clusters of workstations. Clust. Comput. 10(2): 187-202 (2007)
Coauthor Index
aka: Alba C. M. A. Melo
aka: George Luiz Medeiros Teodoro
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