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Ilias Tagkopoulos
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2020 – today
- 2024
- [j15]Ilias Tagkopoulos
, J. Mason Earles, Danielle G. Lemay, Xin Liu, Nitin Nitin, Aaron D. Smith, Tarek I. Zohdi, Stephen F. Brown:
The AIFS Institute: Building a better food system through AI. AI Mag. 45(1): 89-93 (2024) - [j14]Jason Youn, Fangzhou Li, Gabriel Simmons, Shanghyeon Kim
FoodAtlas: Automated knowledge extraction of food and chemicals from literature. Comput. Biol. Medicine 181: 109072 (2024) - [j13]Fangzhou Li, Jason Youn, Christian Millsop, Ilias Tagkopoulos:
Predicting clinical trial success for Clostridium difficile infections based on preclinical data. Frontiers Artif. Intell. 7 (2024) - [i5]Fanyu Meng, Jules Larke, Xin Liu, Zhaodan Kong, Xin Chen, Danielle G. Lemay, Ilias Tagkopoulos:
Interpreting Inflammation Prediction Model via Tag-based Cohort Explanation. CoRR abs/2410.14082 (2024) - 2023
- [c11]Jason Youn, Ilias Tagkopoulos:
KGLM: Integrating Knowledge Graph Structure in Language Models for Link Prediction. *SEM@ACL 2023: 217-224 - [i4]Jason Youn, Fangzhou Li, Ilias Tagkopoulos:
Semi-Automated Construction of Food Composition Knowledge Base. CoRR abs/2301.11322 (2023) - 2022
- [j12]Ilias Tagkopoulos, Stephen F. Brown, Xin Liu, Qing Zhao, Tarek I. Zohdi, J. Mason Earles, Nitin Nitin, Daniel E. Runcie
Special report: AI Institute for next generation food systems (AIFS). Comput. Electron. Agric. 196: 106819 (2022) - [j11]Ameen Eetemadi
Algorithmic lifestyle optimization. J. Am. Medical Informatics Assoc. 30(1): 38-45 (2022) - [i3]Jason Youn, Ilias Tagkopoulos:
KGLM: Integrating Knowledge Graph Structure in Language Models for Link Prediction. CoRR abs/2211.02744 (2022) - 2020
- [j10]Jason Youn, Tarini Naravane, Ilias Tagkopoulos:
Using Word Embeddings to Learn a Better Food Ontology. Frontiers Artif. Intell. 3: 584784 (2020) - [c10]Albara Ah Ramli
BWCNN: Blink to Word, a Real-Time Convolutional Neural Network Approach. ICIOT 2020: 133-140 - [i2]Albara Ah Ramli, Rex Liu, Rahul Krishnamoorthy, Vishal I B, Xiaoxiao Wang, Ilias Tagkopoulos, Xin Liu:
BWCNN: Blink to Word, a Real-Time Convolutional Neural Network Approach. CoRR abs/2006.01232 (2020)
2010 – 2019
- 2019
- [j9]Ameen Eetemadi
Genetic Neural Networks: an artificial neural network architecture for capturing gene expression relationships. Bioinform. 35(13): 2226-2234 (2019) - 2017
- [j8]Minseung Kim, Ameen Eetemadi, Ilias Tagkopoulos
DeepPep: Deep proteome inference from peptide profiles. PLoS Comput. Biol. 13(9) (2017) - 2015
- [j7]Minseung Kim, Violeta Zorraquino, Ilias Tagkopoulos:
Microbial Forensics: Predicting Phenotypic Characteristics and Environmental Conditions from Large-Scale Gene Expression Profiles. PLoS Comput. Biol. 11(3) (2015) - [i1]Ameen Eetemadi, Ilias Tagkopoulos:
A Distribution Adaptive Framework for Prediction Interval Estimation Using Nominal Variables. CoRR abs/1511.05688 (2015) - 2014
- [j6]Hnin H. Aung, Athanasios Tsoukalas, John C. Rutledge, Ilias Tagkopoulos:
A systems biology analysis of brain microvascular endothelial cell lipotoxicity. BMC Syst. Biol. 8: 80 (2014) - [j5]Eren Gultepe, Jeffrey P. Green, Hien Nguyen, Jason Adams, Timothy E. Albertson, Ilias Tagkopoulos
From vital signs to clinical outcomes for patients with sepsis: a machine learning basis for a clinical decision support system. J. Am. Medical Informatics Assoc. 21(2): 315-325 (2014) - 2013
- [j4]Andreas Pavlogiannis
A flood-based information flow analysis and network minimization method for gene regulatory networks. BMC Bioinform. 14: 137 (2013) - 2012
- [j3]Vadim Mozhayskiy, Ilias Tagkopoulos
Guided evolution of in silico microbial populations in complex environments accelerates evolutionary rates through a step-wise adaptation. BMC Bioinform. 13(S-10): S10 (2012) - [j2]Vadim Mozhayskiy, Ilias Tagkopoulos
Horizontal gene transfer dynamics and distribution of fitness effects during microbial in silico evolution. BMC Bioinform. 13(S-10): S13 (2012) - [c9]Eren Gultepe, Hien Nguyen, Timothy E. Albertson, Ilias Tagkopoulos:
A Bayesian network for early diagnosis of sepsis patients: a basis for a clinical decision support system. ICCABS 2012: 1-5 - [c8]Linh Hunyh, Ilias Tagkopoulos:
A robust, library-based, optimization-driven method for automatic gene circuit design. ICCABS 2012: 1-6 - 2011
- [c7]Robert Miller, Vadim Mozhayskiy, Ilias Tagkopoulos
EVEVis: A multi-scale visualization system for dense evolutionary data. BioVis 2011: 143-150 - [c6]Vadim Mozhayskiy, Ilias Tagkopoulos:
In Silico Evolution of Multi-scale Microbial Systems in the Presence of Mobile Genetic Elements and Horizontal Gene Transfer. ISBRA 2011: 262-273 - [c5]Vadim Mozhayskiy, Bob Miller, Kwan-Liu Ma, Ilias Tagkopoulos
A scalable multi-scale framework for parallel simulation and visualization of microbial evolution. TG 2011: 7:1-7:8
2000 – 2009
- 2006
- [j1]Sun-Yuan Kung, Man-Wai Mak
Symmetric and Asymmetric Multi-modality Biclustering Analysis for Microarray Data Matrix. J. Bioinform. Comput. Biol. 4(2): 275-298 (2006) - 2005
- [c4]Ilias Tagkopoulos, Nikolai Slavov
Multi-Class Biclustering and Classification Based on Modeling of Gene Regulatory Networks. BIBE 2005: 89-96 - [c3]Ilias Tagkopoulos:
A Transcriptional Approach to Gene Clustering. CIBCB 2005: 223-229 - [c2]Sun-Yuan Kung, Man-Wai Mak
Multi-Metric and Multi-Substructure Biclustering Analysis for Gene Expression Data. CSB 2005: 123-134 - 2003
- [c1]Ilias Tagkopoulos, Charles A. Zukowski, German Cavelier, Dimitris Anastassiou:
A custom FPGA for the simulation of gene regulatory networks. ACM Great Lakes Symposium on VLSI 2003: 132-135
Coauthor Index
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