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Wei-Sheng Wu
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2020 – today
- 2024
- [j31]Tzu-Hsien Yang
, Guan-Da Syu
BAPCP: A comprehensive and user-friendly web tool for identifying biomarkers from protein microarray technologies. Comput. Methods Programs Biomed. 254: 108260 (2024) - [j30]Tzu-Hsien Yang
Identifying Human miRNA Target Sites via Learning the Interaction Patterns between miRNA and mRNA Segments. J. Chem. Inf. Model. 64(7): 2445-2453 (2024) - 2022
- [j29]Tzu-Hsien Yang
YMLA: A comparative platform to carry out functional enrichment analysis for multiple gene lists in yeast. Comput. Biol. Medicine 151(Part): 106314 (2022) - 2021
- [j28]Tzu-Hsien Yang
Identifying piRNA targets on mRNAs in C. elegans using a deep multi-head attention network. BMC Bioinform. 22(1): 503 (2021) - [j27]Wei-Sheng Wu, Yi-Hong Tsao, Sheng-Cian Shiue, Ting-Yu Chen, Yan Yuan Tseng, Joseph T. Tseng:
A tool for analyzing and visualizing ribo-seq data at the isoform level. BMC Bioinform. 22-S(10): 271 (2021) - 2020
- [j26]Wei-Sheng Wu
YQFC: a web tool to compare quantitative biological features between two yeast gene lists. Database J. Biol. Databases Curation 2020 (2020)
2010 – 2019
- 2019
- [j25]Wei-Sheng Wu, Jordan S. Brown, Tsung-Te Chen, Yu-Han Chu, Wei-Che Huang, Shikui Tu, Heng-Chi Lee
piRTarBase: a database of piRNA targeting sites and their roles in gene regulation. Nucleic Acids Res. 47(Database-Issue): D181-D187 (2019) - 2018
- [j24]Wei-Sheng Wu
HRPDviewer: human ribosome profiling data viewer. Database J. Biol. Databases Curation 2018: bay074 (2018) - [j23]Wei-Sheng Wu, Hao-Ping Tu, Yu-Han Chu, Torbjörn E. M. Nordling
YHMI: a web tool to identify histone modifications and histone/chromatin regulators from a gene list in yeast. Database J. Biol. Databases Curation 2018: bay116 (2018) - [j22]Wei-Sheng Wu, Wei-Che Huang, Jordan S. Brown, Donglei Zhang, Xiaoyan Song, Hao Chen, Shikui Tu, Zhiping Weng, Heng-Chi Lee
pirScan: a webserver to predict piRNA targeting sites and to avoid transgene silencing in C. elegans. Nucleic Acids Res. 46(Webserver-Issue): W43-W48 (2018) - 2017
- [j21]Wei-Sheng Wu
YGMD: a repository for yeast cooperative transcription factor sets and their target gene modules. Database J. Biol. Databases Curation 2017: bax085 (2017) - [j20]Wei-Sheng Wu, Meng-Jhun Jhou:
MVIAeval: a web tool for comprehensively evaluating the performance of a new missing value imputation algorithm. BMC Bioinform. 18(1): 31:1-31:10 (2017) - 2016
- [j19]Wei-Sheng Wu, Fu-Jou Lai, Bor-Wen Tu, Darby Tien-Hao Chang:
CoopTFD: a repository for predicted yeast cooperative transcription factor pairs. Database J. Biol. Databases Curation 2016 (2016) - 2015
- [j18]Fu-Jou Lai, Hong-Tsun Chang, Wei-Sheng Wu:
PCTFPeval: a web tool for benchmarking newly developed algorithms for predicting cooperative transcription factor pairs in yeast. BMC Bioinform. 16(S18): S2 (2015) - 2014
- [j17]Tzu-Hsien Yang
YTRP: a repository for yeast transcriptional regulatory pathways. Database J. Biol. Databases Curation 2014 (2014) - [j16]Tzu-Hsien Yang
iPhos: a toolkit to streamline the alkaline phosphatase-assisted comprehensive LC-MS phosphoproteome investigation. BMC Bioinform. 15(S-16): S10 (2014) - [j15]Tzu-Hsien Yang
cisMEP: an integrated repository of genomic epigenetic profiles and cis-regulatory modules in Drosophila. BMC Syst. Biol. 8(S-4): S8 (2014) - [j14]Fu-Jou Lai, Hong-Tsun Chang, Yueh-Min Huang, Wei-Sheng Wu:
A comprehensive performance evaluation on the prediction results of existing cooperative transcription factors identification algorithms. BMC Syst. Biol. 8(S-4): S9 (2014) - [j13]Fu-Jou Lai, Mei-Huei Jhu, Chia-Chun Chiu, Yueh-Min Huang, Wei-Sheng Wu:
Identifying cooperative transcription factors in yeast using multiple data sources. BMC Syst. Biol. 8(S-5): S2 (2014) - [j12]Wei-Sheng Wu, Ming-Liang Wei, Chia-Ming Yeh, Darby Tien-Hao Chang:
A regulatory similarity measure using the location information of transcription factor binding sites in Saccharomyces cerevisiae. BMC Syst. Biol. 8(S-5): S9 (2014) - [j11]Benjamin D. Pope
Topologically associating domains are stable units of replication-timing regulation Open. Nat. 515(7527): 402-405 (2014) - [c2]Chia-Chun Chiu, Wei-Sheng Wu:
IMDE: An easy-to-use web server for missing data estimation. ICCA 2014: 511-514 - 2013
- [j10]Sendren Sheng-Dong Xu
Fuzzy Logic Applications in Control Theory and Systems Biology. Adv. Fuzzy Syst. 2013: 504728:1 (2013) - [j9]Hsiuying Wang
Shrinkage regression-based methods for microarray missing value imputation. BMC Syst. Biol. 7(S-6): S11 (2013) - [j8]Chia-Chun Chiu, Shih-Yao Chan, Chung-Ching Wang, Wei-Sheng Wu:
Missing value imputation for microarray data: a comprehensive comparison study and a web tool. BMC Syst. Biol. 7(S-6): S12 (2013) - [j7]Tzu-Hsien Yang
Inferring functional transcription factor-gene binding pairs by integrating transcription factor binding data with transcription factor knockout data. BMC Syst. Biol. 7(S-6): S13 (2013) - 2012
- [j6]Tzu-Hsien Yang
Identifying biologically interpretable transcription factor knockout targets by jointly analyzing the transcription factor knockout microarray and the ChIP-chip data. BMC Syst. Biol. 6: 102 (2012) - 2011
- [j5]Darby Tien-Hao Chang, Cheng-Yi Huang, Chi-Yeh Wu, Wei-Sheng Wu:
YPA: an integrated repository of promoter features in Saccharomyces cerevisiae. Nucleic Acids Res. 39(Database-Issue): 647-652 (2011)
2000 – 2009
- 2008
- [j4]Wei-Sheng Wu, Wen-Hsiung Li
Systematic identification of yeast cell cycle transcription factors using multiple data sources. BMC Bioinform. 9 (2008) - 2007
- [j3]Wei-Sheng Wu, Wen-Hsiung Li
Identifying regulatory targets of cell cycle transcription factors using gene expression and ChIP-chip data. BMC Bioinform. 8 (2007) - 2006
- [j2]Wei-Sheng Wu, Wen-Hsiung Li
Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle. BMC Bioinform. 7: 421 (2006) - [c1]Bor-Sen Chen, Wei-Sheng Wu:
Robust Filtering Circuit Design for Gene Networks under Intrinsic and Extrinsic Molecular Noises. SMC 2006: 3590-3595 - 2005
- [j1]Bor-Sen Chen, Yu-Chao Wang
A new measure of the robustness of biochemical networks. Bioinform. 21(11): 2698-2705 (2005)
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