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Habtom W. Ressom
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2020 – today
- 2023
- [c58]Yichen Guo
, Marie Denis, Rency S. Varghese, Sidharth S. Jain, Mahlet G. Tadesse, Habtom W. Ressom:
Bayesian Approach Integrating Prior Knowledge for Identifying miRNA-mRNA Interactions in Hepatocellular Carcinoma. BIBM 2023: 3768-3774 - [c57]Hoi Yan Katharine Chau, Hongyu Ao, Xinran Zhang, Shijinqiu Gao, Rency S. Varghese, Habtom W. Ressom:
Deep Learning Based Metabolite Annotation. EMBC 2023: 1-4 - 2022
- [c56]Sidharth S. Jain, Megan E. Barefoot, Rency S. Varghese, Habtom W. Ressom:
Cell-type Deconvolution and Age Estimation Using DNA Methylation Reveals NK Cell Deficiency in the Hepatocellular Carcinoma Microenvironment. BIBM 2022: 444-449 - [c55]Marie Denis, Rency S. Varghese, Megan E. Barefoot, Mahlet G. Tadesse, Habtom W. Ressom:
A Bayesian two-step integrative procedure incorporating prior knowledge for the identification of miRNA-mRNAs involved in hepatocellular carcinoma. EMBC 2022: 81-86 - 2020
- [c54]Yifan Chen, Megan E. Barefoot, Rency S. Varghese, Kuijun Wang, Cristina Di Poto, Habtom W. Ressom:
Integrative Analysis to Identify Race-Associated Metabolite Biomarkers for Hepatocellular Carcinoma. EMBC 2020: 5300-5303 - [c53]Rency S. Varghese, Yuan Zhou, Yifan Chen, Megan E. Barefoot, Mahlet G. Tadesse, Habtom W. Ressom:
Epigenetic changes associated with mechanisms of disparities in hepatocellular carcinoma. EMBC 2020: 5320-5325
2010 – 2019
- 2019
- [c52]Ziling Fan, Kian Ghaffari, Amber Alley, Habtom W. Ressom:
Metabolite Identification Using Artificial Neural Network. BIBM 2019: 244-248 - [c51]Megan E. Barefoot, Yifan Chen, Rency S. Varghese, Yuan Zhou, Habtom W. Ressom:
Integrative Analysis of DNA Methylation and Gene Expression Patterns in Tissues from Hepatocellular Carcinoma Patients. BIBM 2019: 267-274 - [c50]Ziling Fan, Yuan Zhou, Habtom W. Ressom:
MOTA: Multi-omic integrative analysis for biomarker discovery. EMBC 2019: 243-247 - [c49]Megan E. Barefoot, Rency S. Varghese, Yuan Zhou, Cristina Di Poto, Alessia Ferrarini
Multi-omic Pathway and Network Analysis to Identify Biomarkers for Hepatocellular Carcinoma. EMBC 2019: 1350-1354 - 2018
- [c48]Zhenzhi Li, Yiming Zuo, Chaohui Xu, Rency S. Varghese, Habtom W. Ressom:
INDEED: R package for network based differential expression analysis. BIBM 2018: 2709-2712 - 2017
- [j18]Yiming Zuo, Yi Cui, Guoqiang Yu, Ruijiang Li
Incorporating prior biological knowledge for network-based differential gene expression analysis using differentially weighted graphical LASSO. BMC Bioinform. 18(1): 99:1-99:14 (2017) - 2016
- [j17]Minkun Wang, Guoqiang Yu, Habtom W. Ressom:
Integrative Analysis of Proteomic, Glycomic, and Metabolomic Data for Biomarker Discovery. IEEE J. Biomed. Health Informatics 20(5): 1225-1231 (2016) - [c47]Minkun Wang, Cristina Di Poto, Alessia Ferrarini
Metabolomic data deconvolution using probabilistic purification models. BIBM 2016: 204-209 - [c46]Rency S. Varghese, Yiming Zuo, Yi Zhao, Yong-Wei Zhang
Network-based analysis of reverse phase protein array data. BIBM 2016: 312-317 - [c45]Habtom W. Ressom, Cristina Di Poto, Alessia Ferrarini
Multi-omic approaches for characterization of hepatocellular carcinoma. EMBC 2016: 3437-3440 - 2015
- [j16]Mohammad R. Nezami Ranjbar, Cristina Di Poto, Yue Joseph Wang, Habtom W. Ressom:
SIMAT: GC-SIM-MS data analysis tool. BMC Bioinform. 16: 259:1-259:12 (2015) - [j15]Mohammad R. Nezami Ranjbar, Mahlet G. Tadesse, Yue Joseph Wang, Habtom W. Ressom:
Bayesian Normalization Model for Label-Free Quantitative Analysis by LC-MS. IEEE ACM Trans. Comput. Biol. Bioinform. 12(4): 914-927 (2015) - [c44]Minkun Wang, Tsung-Heng Tsai, Guoqiang Yu, Habtom W. Ressom:
Purification of LC/GC-MS based biomolecular expression profiles using a topic model. BIBM 2015: 228-233 - [c43]Yiming Zuo, Guoqiang Yu, Habtom W. Ressom:
Integrating prior biological knowledge and graphical LASSO for network inference. BIBM 2015: 1543-1547 - [c42]Minkun Wang, Guoqiang Yu, Habtom W. Ressom:
Integrative analysis of LC-MS based glycomic and proteomic data. EMBC 2015: 8185-8188 - 2014
- [c41]Yiming Zuo, Guoqiang Yu, Chi Zhang, Habtom W. Ressom:
A new approach for multi-omic data integration. BIBM 2014: 214-217 - 2013
- [j14]Tsung-Heng Tsai
Multi-profile Bayesian alignment model for LC-MS data analysis with integration of internal standards. Bioinform. 29(21): 2774-2780 (2013) - [j13]Yuji Zhang
Module-based breast cancer classification. Int. J. Data Min. Bioinform. 7(3): 284-302 (2013) - [j12]Tsung-Heng Tsai
Profile-Based LC-MS Data Alignment-A Bayesian Approach. IEEE ACM Trans. Comput. Biol. Bioinform. 10(2): 494-503 (2013) - [c40]Minkun Wang, Guoqiang Yu, Yehia Mechref
GPA: An algorithm for LC/MS based glycan profile annotation. BIBM 2013: 16-22 - [c39]Yiming Zuo, Guoqiang Yu, Mahlet G. Tadesse, Habtom W. Ressom:
Reconstructing biological networks using low order partial correlation. BIBM 2013: 171-175 - [e1]Guo-Zheng Li, Sunghoon Kim, Michael Hughes, Geoffrey J. McLachlan, Hongye Sun, Xiaohua Hu, Habtom W. Ressom, Baoyan Liu, Michael N. Liebman:
2013 IEEE International Conference on Bioinformatics and Biomedicine, Shanghai, China, December 18-21, 2013. IEEE Computer Society 2013, ISBN 978-1-4799-1309-1 [contents] - 2012
- [j11]Jinlian Wang, Yuji Zhang
Identification of aberrant pathways and network activities from high-throughput data. Briefings Bioinform. 13(4): 406-419 (2012) - [c38]Mohammad R. Nezami Ranjbar, Yi Zhao, Mahlet G. Tadesse, Yue Joseph Wang, Habtom W. Ressom:
Evaluation of normalization methods for analysis of LC-MS data. BIBM Workshops 2012: 610-617 - [c37]Jinlian Wang, Hongyan Yuan, Mahlet G. Tadesse, Habtom W. Ressom:
Integration of multiple data sources for identifying functional modules using Bayesian network. GENSiPS 2012: 13-17 - [c36]Mohammad R. Nezami Ranjbar, Mahlet G. Tadesse, Yue Joseph Wang, Habtom W. Ressom:
Normalization of LC-MS data using Gaussian process. GENSiPS 2012: 187-190 - [c35]Yi Zhao, Tsung-Heng Tsai, Cristina Di Poto, Lewis K. Pannell, Mahlet G. Tadesse, Habtom W. Ressom:
Variability assessment of LC-MS experiments and its application to experimental design and difference detection. GENSiPS 2012: 195-198 - 2011
- [j10]Getachew K. Befekadu
Probabilistic Mixture Regression Models for Alignment of LC-MS Data. IEEE ACM Trans. Comput. Biol. Bioinform. 8(5): 1417-1424 (2011) - [c34]Rency S. Varghese, Bin Zhou, Habtom W. Ressom:
Meta-analysis of LC-MS based metabolomic experiments. BIBM Workshops 2011: 157-164 - [c33]Bin Zhou, Jun Feng Xiao, Habtom W. Ressom:
A Computational Pipeline for LC-MS/MS Based Metabolite Identification. BIBM 2011: 247-251 - [c32]Tsung-Heng Tsai, Mahlet G. Tadesse, Yue Joseph Wang, Habtom W. Ressom:
Bayesian Alignment Model for LC-MS Data. BIBM 2011: 261-264 - [c31]Mohammad R. Nezami Ranjbar, Yue Joseph Wang, Habtom W. Ressom:
Quality assessment of LC-MS metabolomic data. BIBM Workshops 2011: 1034-1036 - [c30]Jinlian Wang, Habtom W. Ressom:
Analysis of aberrant pathways using HCC candidate biomarkers identified from high-throuput omics studies. BIBM Workshops 2011: 1037-1038 - [c29]Michael F. Ochs, Rachel Karchin, Habtom W. Ressom, Robert Gentleman:
Workshop Introduction. Pacific Symposium on Biocomputing 2011: 364-368 - 2010
- [c28]Leepika Tuli, Tsung-Heng Tsai, Rency S. Varghese, Amrita K. Cheema, Habtom W. Ressom:
Using a spike-in experiment to evaluate analysis of LC-MS data. BIBM Workshops 2010: 67-72 - [c27]Zhiqun Tang, Lihua Zhang, Amrita K. Cheema
A new method for alignment of LC-MALDI-TOF data. BIBM 2010: 346-351 - [c26]Yuji Zhang
Module-based biomarker discovery in breast cancer. BIBM 2010: 352-356 - [c25]Prabhjit Kaur, Kathryn Sheikh, Alexander Kirilyuk
Metabolomic profiling for biomarker discovery in pancreatic cancer. BIBM 2010: 505-509
2000 – 2009
- 2009
- [j9]Habtom W. Ressom, Getachew K. Befekadu
Analysis of LC-MS Data Using probabilitic-based mixture regression models (Analyse von LC-MS-Daten mit wahrscheinlichkeitsbasierter Mischung von Regressionsmodellen). Autom. 57(9): 453-465 (2009) - [c24]Michael F. Ochs, John Quackenbush, Ramana Davuluri, Habtom W. Ressom:
Session Introduction. Pacific Symposium on Biocomputing 2009: 353-355 - 2008
- [j8]Yuji Zhang
Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data. BMC Bioinform. 9 (2008) - [c23]Getachew K. Befekadu, Mahlet G. Tadesse, Habtom W. Ressom:
Probabilistic-Based Mixture Regression Models for Multi-Class Alignment of LC-MS Data. BIOCOMP 2008: 368-373 - [c22]Yuji Zhang, Jianhua Xuan, Benildo de los Reyes, Robert Clarke, Habtom W. Ressom:
Reverse Engineering Module Networks by PSO-RNN Hybrid Modeling. BIOCOMP 2008: 401-407 - [c21]Habtom W. Ressom, Rency S. Varghese, Lenka Goldman, Christopher A. Loffredo, Mohamed Abdel-Hamid, Zuzana Kyselova, Yehia Mechref, Milos V. Novotny, Radoslav Goldman:
Analysis of MALDI-TOF Spectrometry Data for Detection of Glycan Biomarkers. Pacific Symposium on Biocomputing 2008: 216-227 - 2007
- [j7]Habtom W. Ressom, Rency S. Varghese, Steven K. Drake, Glen L. Hortin
Peak selection from MALDI-TOF mass spectra using ant colony optimization. Bioinform. 23(5): 619-626 (2007) - [j6]Mohamad T. Musavi, Habtom W. Ressom, S. Srirangam, Padma Natarajan, R. W. Virnstein, L. J. Morris, W. Tweedale:
Neural network-based light attenuation model for monitoring seagrass population in the Indian river lagoon. J. Intell. Inf. Syst. 29(1): 63-77 (2007) - 2006
- [c20]Habtom W. Ressom, Rency S. Varghese, Eduard Orvisky, Steven K. Drake, Glen L. Hortin
Biomarker Identification and Rule Extraction from Mass Spectral Serum Profiles. CIBCB 2006: 1-7 - [c19]Habtom W. Ressom, Yuji Zhang
Inference of Gene Regulatory Networks from Time Course Gene Expression Data Using Neural Networks and Swarm Intelligence. CIBCB 2006: 1-8 - [c18]Habtom W. Ressom, Yuji Zhang
Inferring Network Interactions Using Recurrent Neural Networks and Swarm Intelligence. EMBC 2006: 4241-4244 - [c17]Habtom W. Ressom, Rency S. Varghese, Eduard Orvisky, Steven K. Drake, Glen L. Hortin
Ant Colony Optimization for Biomarker Identification from MALDI-TOF Mass Spectra. EMBC 2006: 4560-4563 - [c16]Habtom W. Ressom, Kevin Turner, Mohamad T. Musavi:
Estimation of Ocean Water Chlorophyll-a Concentration Using Fuzzy C-means Clustering and Artificial Neural Networks. IJCNN 2006: 4118-4125 - 2005
- [j5]Habtom W. Ressom, Rency S. Varghese, Mohamed Abdel-Hamid, Sohair Abdel-Latif Eissa, Daniel Saha, Lenka Goldman, Emanuel F. Petricoin, Thomas P. Conrads, Timothy D. Veenstra, Christopher A. Loffredo, Radoslav Goldman:
Analysis of mass spectral serum profiles for biomarker selection. Bioinform. 21(21): 4039-4045 (2005) - [j4]Habtom W. Ressom, Padma Natarajan, Rency S. Varghese, Mohamad T. Musavi:
Applications of fuzzy logic in genomics. Fuzzy Sets Syst. 152(1): 125-138 (2005) - [c15]Habtom W. Ressom, Rency S. Varghese, Eduard Orvisky, Steven K. Drake, Glen L. Hortin, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman:
Analysis of MALDI-TOF Serum Profiles for Biomarker Selection and Sample Classification. CIBCB 2005: 378-384 - [c14]Habtom W. Ressom, Rency S. Varghese, Daniel Saha, Eduard Orvisky, Lenka Goldman, Emanuel F. Petricoin, Thomas P. Conrads, Timothy D. Veenstra, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman:
Particle swarm optimization for analysis of mass spectral serum profiles. GECCO 2005: 431-438 - 2004
- [j3]Wayne H. Slade Jr., Habtom W. Ressom, Mohamad T. Musavi, Richard L. Miller:
Inversion of ocean color observations using particle swarm optimization. IEEE Trans. Geosci. Remote. Sens. 42(9): 1915-1923 (2004) - [c13]Wayne H. Slade Jr., Habtom W. Ressom, Mohamad T. Musavi, Richard L. Miller:
Ocean color inversion by particle swarm optimization. IEEE Congress on Evolutionary Computation 2004: 971-977 - [c12]Rency Susan Varghese, Mohamad T. Musavi, Habtom W. Ressom:
A fuzzy confidence value for DNA bases. FUZZ-IEEE 2004: 347-352 - [c11]Wayne H. Slade Jr., Richard L. Miller, Habtom W. Ressom, Padma Natarajan:
Neural network-based retrieval of phytoplankton abundance from remotely-sensed ocean radiance. Neural Networks and Computational Intelligence 2004: 226-231 - [c10]Habtom W. Ressom, S. K. Fyfe, S. Srirangam, Mohamad T. Musavi, Padma Natarajan:
Estimation of photosynthetic efficiency for monitoring seagrass health using neural networks. Neural Networks and Computational Intelligence 2004: 232-237 - 2003
- [j2]Habtom W. Ressom, Dali Wang, Padma Natarajan:
Adaptive double self-organizing maps for clustering gene expression profiles. Neural Networks 16(5-6): 633-640 (2003) - [c9]Habtom W. Ressom, Dali Wang, Rency S. Varghese, Robert Reynolds:
Fuzzy logic-based gene regulatory network. FUZZ-IEEE 2003: 1210-1215 - [c8]Habtom W. Ressom, Dali Wang, Padma Natarajan:
Computational Methods for Identifying Number of Clusters in Gene Expression Data. Neural Networks and Computational Intelligence 2003: 233-238 - 2002
- [j1]Ning Xiong, Lothar Litz, Habtom W. Ressom:
Learning Premises of Fuzzy Rules for Knowledge Acquisition in Classification Problems. Knowl. Inf. Syst. 4(1): 96-111 (2002) - [c7]Mohamad T. Musavi, Habtom W. Ressom, Ross Hinkle, Richard L. Miller:
Biodiversity and Ecosystems Informatics Workshop for the Indian River Lagoon. DG.O 2002 - [c6]Dali Wang, Habtom W. Ressom, Mohamad T. Musavi, Christian Domnisoru:
Double self-organizing maps to cluster gene expression data. ESANN 2002: 45-50 - [c5]Robert Reynolds, Habtom W. Ressom, Mohamad T. Musavi, Christian Domnisoru:
Improving robustness of fuzzy gene modeling. ESANN 2002: 51-56 - 2000
- [c4]Habtom W. Ressom, Holger Voos
On-line estimation of key quality parameters in nonwoven production. SMC 2000: 1745-1749
1990 – 1999
- 1999
- [b1]Habtom W. Ressom:
Dynamic system and virtual sensor modeling using neural networks = Modellierung dynamischer Systeme und virtueller Sensoren mit neuronalen Netzen. Kaiserslautern University of Technology, Germany, VDI-Verlag 1999, ISBN 978-3-18-377108-0, pp. 1-132 - [c3]Habtom W. Ressom:
Modeling a Refrigeration System Using Recurrent Neural Networks. Fuzzy Days 1999: 47-52 - [c2]Habtom W. Ressom:
Modeling a compression plant using recurrent neural networks. IJCNN 1999: 345-348 - 1997
- [c1]Habtom W. Ressom, Lothar Litz:
Neurocontrol of Nonlinear Dynamic Systems Subject to Unmeasured Disturbance Inputs. ICANN 1997: 855-860
Coauthor Index
Rency S. Varghese
aka: Rency Susan Varghese
aka: Rency Susan Varghese
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