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Haim Ashkenazy
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2020 – today
- 2021
- [j16]Michael Bernhofer, Christian Dallago, Timothy Karl, Venkata P. Satagopam, Michael Heinzinger, Maria Littmann, Tobias Olenyi, Jiajun Qiu, Konstantin Schütze, Guy Yachdav, Haim Ashkenazy, Nir Ben-Tal, Yana Bromberg, Tatyana Goldberg, László Kaján, Seán I. O'Donoghue, Chris Sander, Andrea Schafferhans, Avner Schlessinger, Gerrit Vriend, Milot Mirdita, Piotr Gawron, Wei Gu, Yohan Jarosz, Christophe Trefois, Martin Steinegger, Reinhard Schneider, Burkhard Rost:
PredictProtein - Predicting Protein Structure and Function for 29 Years. Nucleic Acids Res. 49(Webserver-Issue): 535-540 (2021)
2010 – 2019
- 2017
- [j15]Eli Levy Karin, Haim Ashkenazy, Susann Wicke, Tal Pupko, Itay Mayrose:
TraitRateProp: a web server for the detection of trait-dependent evolutionary rate shifts in sequence sites. Nucleic Acids Res. 45(Webserver-Issue): W260-W264 (2017) - [j14]Haim Ashkenazy, Eli Levy Karin, Zach Mertens, Reed A. Cartwright, Tal Pupko:
SpartaABC: a web server to simulate sequences with indel parameters inferred using an approximate Bayesian computation algorithm. Nucleic Acids Res. 45(Webserver-Issue): W453-W457 (2017) - 2016
- [j13]Haim Ashkenazy, Shiran Abadi, Eric Martz, Ofer Chay, Itay Mayrose, Tal Pupko, Nir Ben-Tal:
ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules. Nucleic Acids Res. 44(Webserver-Issue): W344-W350 (2016) - 2015
- [j12]Aya Narunsky, Haim Ashkenazy, Rachel Kolodny, Nir Ben-Tal:
Using ConTemplate and the PDB to explore conformational space: on the detection of rare protein conformations. BMC Bioinform. 16(S-3): A3 (2015) - [j11]Itamar Sela, Haim Ashkenazy, Kazutaka Katoh, Tal Pupko:
GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters. Nucleic Acids Res. 43(Webserver-Issue): W7-W14 (2015) - 2014
- [j10]Guy Yachdav, Edda Kloppmann, László Kaján, Maximilian Hecht, Tatyana Goldberg, Tobias Hamp, Peter Hönigschmid, Andrea Schafferhans, Manfred Roos, Michael Bernhofer, Lothar Richter, Haim Ashkenazy, Marco Punta, Avner Schlessinger, Yana Bromberg, Reinhard Schneider, Gerrit Vriend, Chris Sander, Nir Ben-Tal, Burkhard Rost:
PredictProtein - an open resource for online prediction of protein structural and functional features. Nucleic Acids Res. 42(Webserver-Issue): 337-343 (2014) - 2013
- [j9]Ofir Cohen, Haim Ashkenazy, Eli Levy Karin, David Burstein, Tal Pupko:
CoPAP: Coevolution of Presence-Absence Patterns. Nucleic Acids Res. 41(Webserver-Issue): 232-237 (2013) - 2012
- [j8]Ofir Cohen, Haim Ashkenazy, David Burstein, Tal Pupko:
Uncovering the co-evolutionary network among prokaryotic genes. Bioinform. 28(18): 389-394 (2012) - [j7]Haim Ashkenazy, Osnat Penn, Adi Doron-Faigenboim, Ofir Cohen, Gina Cannarozzi, Oren Zomer, Tal Pupko:
FastML: a web server for probabilistic reconstruction of ancestral sequences. Nucleic Acids Res. 40(Web-Server-Issue): 580-584 (2012) - 2011
- [j6]Haim Ashkenazy, Ron Unger, Yossef Kliger:
Hidden conformations in protein structures. Bioinform. 27(14): 1941-1947 (2011) - [j5]Gilad Wainreb, Lior Wolf, Haim Ashkenazy, Yves Dehouck, Nir Ben-Tal:
Protein stability: a single recorded mutation aids in predicting the effects of other mutations in the same amino acid site. Bioinform. 27(23): 3286-3292 (2011) - 2010
- [j4]Ofir Cohen, Haim Ashkenazy, Frida Belinky, Dorothée Huchon, Tal Pupko:
GLOOME: gain loss mapping engine. Bioinform. 26(22): 2914-2915 (2010) - [j3]Osnat Penn, Eyal Privman, Haim Ashkenazy, Giddy Landan, Dan Graur, Tal Pupko:
GUIDANCE: a web server for assessing alignment confidence scores. Nucleic Acids Res. 38(Web-Server-Issue): 23-28 (2010) - [j2]Gilad Wainreb, Haim Ashkenazy, Yana Bromberg, Alina Starovolsky-Shitrit, Turkan Haliloglu, Eytan Ruppin, Karen B. Avraham, Burkhard Rost, Nir Ben-Tal:
MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data. Nucleic Acids Res. 38(Web-Server-Issue): 523-528 (2010) - [j1]Haim Ashkenazy, Elana Erez, Eric Martz, Tal Pupko, Nir Ben-Tal:
ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids. Nucleic Acids Res. 38(Web-Server-Issue): 529-533 (2010)
Coauthor Index
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