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Eric J. Alm
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2020 – today
- 2022
- [j14]Lin Zhang, Likai Chen
, Xiaoqian (annie) Yu
MicrobiomeCensus estimates human population sizes from wastewater samples based on inter-individual variability in gut microbiomes. PLoS Comput. Biol. 18(9): 1010472 (2022) - 2020
- [j13]Ethan D. Evans
Longitudinal wastewater sampling in buildings reveals temporal dynamics of metabolites. PLoS Comput. Biol. 16(6) (2020)
2010 – 2019
- 2018
- [j12]Sean M. Gibbons, Claire Duvallet, Eric J. Alm
Correcting for batch effects in case-control microbiome studies. PLoS Comput. Biol. 14(4) (2018) - 2017
- [j11]Sean M. Gibbons
Two dynamic regimes in the human gut microbiome. PLoS Comput. Biol. 13(2) (2017) - 2016
- [j10]Ilana L. Brito
Mobile genes in the human microbiome are structured from global to individual scales. Nat. 535(7612): 435-439 (2016) - 2015
- [j9]Mukul S. Bansal
Improved gene tree error correction in the presence of horizontal gene transfer. Bioinform. 31(8): 1211-1218 (2015) - 2013
- [j8]Mukul S. Bansal
Reconciliation Revisited: Handling Multiple Optima when Reconciling with Duplication, Transfer, and Loss. J. Comput. Biol. 20(10): 738-754 (2013) - [c1]Mukul S. Bansal
Reconciliation Revisited: Handling Multiple Optima When Reconciling with Duplication, Transfer, and Loss. RECOMB 2013: 1-13 - 2012
- [j7]Mukul S. Bansal
Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss. Bioinform. 28(12): 283-291 (2012) - [j6]Jonathan Friedman, Eric J. Alm:
Inferring Correlation Networks from Genomic Survey Data. PLoS Comput. Biol. 8(9) (2012) - 2010
- [j5]Paramvir S. Dehal
MicrobesOnline: an integrated portal for comparative and functional genomics. Nucleic Acids Res. 38(Database-Issue): 396-400 (2010) - [j4]Francisco M. Camas, Eric J. Alm, Juan F. Poyatos:
Local Gene Regulation Details a Recognition Code within the LacI Transcriptional Factor Family. PLoS Comput. Biol. 6(11) (2010)
2000 – 2009
- 2006
- [j3]Morgan N. Price, Adam P. Arkin, Eric J. Alm:
OpWise: Operons aid the identification of differentially expressed genes in bacterial microarray experiments. BMC Bioinform. 7: 19 (2006) - [j2]Eric J. Alm, Katherine H. Huang, Adam P. Arkin
The Evolution of Two-Component Systems in Bacteria Reveals Different Strategies for Niche Adaptation. PLoS Comput. Biol. 2(11) (2006) - 2005
- [j1]Dmitry A. Rodionov
Dissimilatory Metabolism of Nitrogen Oxides in Bacteria: Comparative Reconstruction of Transcriptional Networks. PLoS Comput. Biol. 1(5) (2005)
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