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Emily R. Pfaff
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2020 – today
- 2023
- [j18]Peter Leese
, Adit Anand
Clinical encounter heterogeneity and methods for resolving in networked EHR data: a study from N3C and RECOVER programs. J. Am. Medical Informatics Assoc. 30(6): 1125-1136 (2023) - [j17]Emily R. Pfaff
De-black-boxing health AI: demonstrating reproducible machine learning computable phenotypes using the N3C-RECOVER Long COVID model in the All of Us data repository. J. Am. Medical Informatics Assoc. 30(7): 1305-1312 (2023) - [j16]Sijia Liu
An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C). J. Am. Medical Informatics Assoc. 30(12): 2036-2040 (2023) - [c12]Guohui Xiao, Emily R. Pfaff, Eric Prud'hommeaux, David Booth, Deepak K. Sharma, Nan Huo, Yue Yu, Nansu Zong, Kathryn J. Ruddy, Christopher G. Chute, Guoqian Jiang:
FHIR-Ontop-OMOP: Querying OMOP clinical databases as FHIR-compliant Clinical Knowledge Graphs. SWAT4HCLS 2023: 165-166 - 2022
- [j15]Karamarie Fecho, Stanley C. Ahalt, Michael Knowles, Ashok K. Krishnamurthy, Margaret Leigh, Kenneth Morton, Emily R. Pfaff, Max Wang, Hong Yi
Leveraging Open Electronic Health Record Data and Environmental Exposures Data to Derive Insights Into Rare Pulmonary Disease. Frontiers Artif. Intell. 5 (2022) - [j14]Emily R. Pfaff
Synergies between centralized and federated approaches to data quality: a report from the national COVID cohort collaborative. J. Am. Medical Informatics Assoc. 29(4): 609-618 (2022) - [j13]Kellie M. Walters
Supporting research, protecting data: one institution's approach to clinical data warehouse governance. J. Am. Medical Informatics Assoc. 29(4): 707-712 (2022) - [j12]Katie R. Bradwell
Harmonizing units and values of quantitative data elements in a very large nationally pooled electronic health record (EHR) dataset. J. Am. Medical Informatics Assoc. 29(7): 1172-1182 (2022) - [j11]Jason A. Thomas, Randi E. Foraker
Demonstrating an approach for evaluating synthetic geospatial and temporal epidemiologic data utility: results from analyzing >1.8 million SARS-CoV-2 tests in the United States National COVID Cohort Collaborative (N3C). J. Am. Medical Informatics Assoc. 29(8): 1350-1365 (2022) - [j10]Yue Yu
Developing an ETL tool for converting the PCORnet CDM into the OMOP CDM to facilitate the COVID-19 data integration. J. Biomed. Informatics 127: 104002 (2022) - [j9]Guohui Xiao
FHIR-Ontop-OMOP: Building clinical knowledge graphs in FHIR RDF with the OMOP Common data Model. J. Biomed. Informatics 134: 104201 (2022) - [j8]Griffin M. Weber, Chuan Hong
International comparisons of laboratory values from the 4CE collaborative to predict COVID-19 mortality. npj Digit. Medicine 5 (2022) - [c11]James Champion, Paul Kovach, Asiyah Ahmad, Anna Jojic, Buck Bohac, Adam M. Lee, Patrick Conway, Emily R. Pfaff:
CAMP FHIR: Clinical Asset Mapping Program for FHIR. AMIA 2022 - [c10]James Champion, Eric Prud'hommeaux, David Booth, Gaurav Vaidya, James P. Balhoff, Deepak K. Sharma, Guoqian Jiang, Emily R. Pfaff:
Maximizing Interoperability, Enriching EHR Data: Transforming HL7 FHIR Data to RDF Using the FHIR RDF Playground. AMIA 2022 - [c9]Sofia Z. Dard, James Champion, Robert L. Bradford, Adam M. Lee, Emily R. Pfaff:
HIPAA Safe Harbor (HuSH) Common Data Models for Education. AMIA 2022 - [c8]Nan Huo, Yue Yu, Nansu Zong, Andrea Cheville, Claude Nanjo, Eric Prud'hommeaux, Deirdre Pachman, Guohui Xiao, Emily R. Pfaff, Christopher G. Chute, Guoqian Jiang, Kathryn J. Ruddy:
Modeling a Cancer Symptom Control Domain Using HL7 FHIR: Applicability of the Minimal Common Oncology Data Elements (mCODE). AMIA 2022 - [c7]Adam M. Lee, Paul Kovach, James Champion, Patrick Conway, Emily R. Pfaff:
Relational FHIR: Converting FHIR's Hierarchal Schema. AMIA 2022 - [c6]Yue Yu, Kathryn J. Ruddy, Nan Huo, Nansu Zong, Deirdre Pachman, Christopher G. Chute, Emily R. Pfaff, Andrea Cheville, Guoqian Jiang:
A Comparative Study on the Capability of Real-World Antineoplastic Drug Data Collection by CanMED, ATC and HemOnc. AMIA 2022 - [c5]Deepak K. Sharma, Eric Prud'hommeaux, David Booth, Kevin J. Peterson, Daniel J. Stone, Harold Solbrig, Guohui Xiao, Emily R. Pfaff, Guoqian Jiang:
Implementing a New FHIR RDF Specification for Semantic Clinical Data Using a JSON-LD-based Approach. SWAT4HCLS 2022: 82-86 - 2021
- [j7]Melissa A. Haendel, Christopher G. Chute, Tellen D. Bennett, David A. Eichmann
The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment. J. Am. Medical Informatics Assoc. 28(3): 427-443 (2021) - [c4]Marshall Clark, Adam M. Lee, Emily R. Pfaff, Kristin Kostka, Matvey B. Palchuk, Lora Lingrey, Michele Morris, Robert T. Miller:
National COVID Cohort Collaborative (N3C) Case-control Buddies. AMIA 2021 - [c3]David Borland, Irena Brain, Karamarie Fecho, Emily R. Pfaff, Hao Xu, James Champion, Chris Bizon, David Gotz:
Enabling Longitudinal Exploratory Analysis of Clinical COVID Data. VAHC 2021: 19-24 - [i3]David Borland, Irena Brain, Karamarie Fecho, Emily R. Pfaff, Hao Xu, James Champion, Chris Bizon, David Gotz:
Enabling Longitudinal Exploratory Analysis of Clinical COVID Data. CoRR abs/2108.11476 (2021) - [i2]Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Rui Zhang, John D. Osborne, Masoud Rouhizadeh, Yongqun He, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu:
An Open Natural Language Processing Development Framework for EHR-based Clinical Research: A case demonstration using the National COVID Cohort Collaborative (N3C). CoRR abs/2110.10780 (2021) - 2020
- [j6]Hao Xu, Steven Cox, Lisa Stillwell, Emily R. Pfaff, James Champion, Stanley C. Ahalt, Karamarie Fecho
FHIR PIT: an open software application for spatiotemporal integration of clinical data and environmental exposures data. BMC Medical Informatics Decis. Mak. 20(1): 53 (2020) - [c2]Robert L. Bradford, Sofia Dard, Emily R. Pfaff, Ashok K. Krishnamurthy:
Utilizing Encrypted Hashes to Link Patient Cohorts via Streamlined SAS Programs. AMIA 2020
2010 – 2019
- 2019
- [j5]Emily R. Pfaff
Recruiting for a pragmatic trial using the electronic health record and patient portal: successes and lessons learned. J. Am. Medical Informatics Assoc. 26(1): 44-49 (2019) - [j4]Karamarie Fecho, Emily R. Pfaff
A novel approach for exposing and sharing clinical data: the Translator Integrated Clinical and Environmental Exposures Service. J. Am. Medical Informatics Assoc. 26(10): 1064-1073 (2019) - [j3]Karamarie Fecho
Sex, obesity, diabetes, and exposure to particulate matter among patients with severe asthma: Scientific insights from a comparative analysis of open clinical data sources during a five-day hackathon. J. Biomed. Informatics 100 (2019) - [j2]Xingmin Aaron Zhang
Semantic integration of clinical laboratory tests from electronic health records for deep phenotyping and biomarker discovery. npj Digit. Medicine 2 (2019) - [c1]Robert L. Bradford, Marshall Clark, Emily R. Pfaff:
SMOREs : Synergistic Medication Organizer for RxNorm and Expansions, a Tool For Improving Semantic Relationships of Institutional Medications to Standardized Ontologies. AMIA 2019 - 2018
- [i1]Matt Buranosky
FDTool: a Python application to mine for functional dependencies and candidate keys in tabular data. F1000Research 7: 1667 (2018) - 2016
- [j1]Victor W. Zhong, Jihad S. Obeid
An efficient approach for surveillance of childhood diabetes by type derived from electronic health record data: the SEARCH for Diabetes in Youth Study. J. Am. Medical Informatics Assoc. 23(6): 1060-1067 (2016)
Coauthor Index
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